Related papers: Simple permutations with order $4n + 2$. Part I
In order to study signed Eulerian numbers, we introduce permutations of a particular type, called parity-alternate permutations, because they take even and odd entries alternately. The objective of this paper is twofold. The first is to…
A generalized Catalan matrix $(a_{n,k})_{n,k\ge 0}$ is generated by two seed sequences $\mathbf{s}=(s_0,s_1,\ldots)$ and $\mathbf{t}=(t_1,t_2,\ldots)$ together with a recurrence relation. By taking $s_\ell=2\ell+1$ and $t_\ell=\ell^2$ we…
We describe some configurations of conjugate permutations which may be used as a mathematical model of some genetical processes and crystal growth.
In this article we consider the cycle structure of compositions of pairs of involutions in the symmetric group S_n chosen uniformly at random. These can be modeled as modified 2-regular graphs, giving rise to exponential generating…
The general Markov plus invariable sites (GM+I) model of biological sequence evolution is a two-class model in which an unknown proportion of sites are not allowed to change, while the remainder undergo substitutions according to a Markov…
The problem of counting plane trees with $n$ edges and an even or an odd number of leaves was studied by Eu, Liu and Yeh, in connection with an identity on coloring nets due to Stanley. This identity was also obtained by Bonin, Shapiro and…
In a recent article on overpartitions, Merca considered the auxiliary function $a(n)$ which counts the number of partitions of $n$ where odd parts are repeated at most twice (and there are no restrictions on the even parts). In the course…
We apply the theory of markov random fields on trees to derive a phase transition in the number of samples needed in order to reconstruct phylogenies. We consider the Cavender-Farris-Neyman model of evolution on trees, where all the inner…
Answering a question of Donald Knuth, we find the bivariate exponential generating function for "up-up-or-down-down'' permutations of odd length according to their last entry. An up-up-or-down-down permutation is a permutation $a_1a_2\cdots…
We exploit a bijection between plane recursive trees and Stirling permutations; this yields the equivalence of some results previously proven separately by different methods for the two types of objects as well as some new results. We also…
The combinatorial theory for the set of parity alternating permutations is expounded. In view of the numbers of ascents and inversions, several enumerative aspects of the set are investigated. In particular, it is shown that signed Eulerian…
Tandem duplication is an evolutionary process whereby a segment of DNA is replicated and proximally inserted. The different configurations that can arise from this process give rise to some interesting combinatorial questions. Firstly, we…
For a finite field of odd number of elements we construct families of permutation binomials and permutation trinomials with one fixed-point (namely zero) and remaining elements being permuted as disjoint cycles of same length. Binomials and…
We study permutations that are sorted by operators of the form $\mathbf{S} \circ \alpha \circ \mathbf{S}$, where $\mathbf{S}$ is the usual stack sorting operator introduced by D. Knuth and $\alpha$ is any $D_8$-symmetry obtained combining…
The simple permutations in two permutation classes --- the 321-avoiding permutations and the skew-merged permutations --- are enumerated using a uniform method. In both cases, these enumerations were known implicitly, by working backwards…
Permutation patterns and pattern avoidance have been intensively studied in combinatorics and computer science, going back at least to the seminal work of Knuth on stack-sorting (1968). Perhaps the most natural algorithmic question in this…
Permutation Matrices are a well known class of matrices which encode the elements of the symmetric group on $d$ elements as a square $d\times d$ matrix. Motivated by [4], we define a similar class of matrices which are a generalization of…
In this dissertation, we explore the structure of inversion graphs of permutations--a class of graphs that naturally arises by representing each permutation as a graph, where vertices correspond to entries and edges encode inversions.…
The periodic (ordinal) patterns of a map are the permutations realized by the relative order of the points in its periodic orbits. We give a combinatorial characterization of the periodic patterns of an arbitrary signed shift, in terms of…
We present a bijection between permutation matrices and descending plane partitions without special parts, which respects the quadruple of statistics considered by Behrend, Di Francesco and Zinn--Justin. This bijection involves the…