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We present a benchmark targeting a novel class of systems: semantic query processing engines. Those systems rely inherently on generative and reasoning capabilities of state-of-the-art large language models (LLMs). They extend SQL with…

Motivation: An essential step in developing computational tools for the inference, optimization, and simulation of biochemical reaction networks is gauging tool performance against earlier efforts using an appropriate set of benchmarks.…

Molecular Networks · Quantitative Biology 2022-09-14 Michael A. Kochen , H. Steven Wiley , Song Feng , Herbert M. Sauro

The web information resources are growing explosively in number and volume. Now to retrieve relevant data from web has become very difficult and time-consuming. Semantic Web envisions that these web resources should be developed in…

Software Engineering · Computer Science 2010-06-24 Amjad Farooq , Syed Ahsan , Abad Shah

Semantic similarity measures (SSMs) refer to a set of algorithms used to quantify the similarity of two or more terms belonging to the same ontology. Ontology terms may be associated to concepts, for instance in computational biology gene…

Molecular Networks · Quantitative Biology 2013-05-22 Pietro Hiram Guzzi , Simone Truglia , Pierangelo Veltri , Mario Cannataro

To learn about real world phenomena, scientists have traditionally used models with clearly interpretable elements. However, modern machine learning (ML) models, while powerful predictors, lack this direct elementwise interpretability (e.g.…

Machine Learning · Statistics 2024-07-16 Timo Freiesleben , Gunnar König , Christoph Molnar , Alvaro Tejero-Cantero

In this paper, we explore the capabilities of LLMs in capturing lexical-semantic knowledge from WordNet on the example of the LLaMA-2-7b model and test it on multiple lexical semantic tasks. As the outcome of our experiments, we present…

Computation and Language · Computer Science 2024-11-15 Viktor Moskvoretskii , Ekaterina Neminova , Alina Lobanova , Alexander Panchenko , Irina Nikishina

Network interpretation as an effort to reveal the features learned by a network remains largely visualization-based. In this paper, our goal is to tackle semantic network interpretation at both filter and decision level. For filter-level…

Computer Vision and Pattern Recognition · Computer Science 2021-11-22 Pei Guo , Ryan Farrell

This paper presents novel extensions and applications of the UPPAAL-SMC model checker. The extensions allow for statistical model checking of stochastic hybrid systems. We show how our race-based stochastic semantics extends to networks of…

Computational Engineering, Finance, and Science · Computer Science 2012-08-21 Alexandre David , Dehui Du , Kim G. Larsen , Axel Legay , Marius Mikučionis , Danny Bøgsted Poulsen , Sean Sedwards

Structured Query Language (SQL) has remained the standard query language for databases. SQL is highly optimized for processing structured data laid out in relations. Meanwhile, in the present application development landscape, it is highly…

Databases · Computer Science 2026-04-24 Udesh Kumarasinghe , Tyler Liu , Ahmed R. Mahmood , Chunwei Liu , Walid G. Aref

We present a perspective on molecular machine learning (ML) in the field of chemical process engineering. Recently, molecular ML has demonstrated great potential in (i) providing highly accurate predictions for properties of pure components…

Chemical Physics · Physics 2025-09-01 Jan G. Rittig , Manuel Dahmen , Martin Grohe , Philippe Schwaller , Alexander Mitsos

This paper provides an in-depth examination of the concept of semantic diffusion as a complementary instrument to large language models (LLMs) for design applications. Conventional LLMs and diffusion models fail to induce a convergent,…

Human-Computer Interaction · Computer Science 2025-05-15 Alexander P. Ryjov , Alina A. Egorova

The semantic Web service discovery has been given massive attention within the last few years. With the increasing number of Web services available on the web, looking for a particular service has become very difficult, especially with the…

Information Retrieval · Computer Science 2014-09-11 Ibrahim El Bitar , Fatima-Zahra Belouadha , Ounsa Roudies

The relatively recent adoption of Knowledge Graphs as an enabling technology in multiple high-profile artificial intelligence and cognitive applications has led to growing interest in the Semantic Web technology stack. Many…

Artificial Intelligence · Computer Science 2018-06-05 Paul Cuddihy , Justin McHugh , Jenny Weisenberg Williams , Varish Mulwad , Kareem S. Aggour

The Unified Modelling Language is emerging as a de-facto standard for modelling object-oriented systems. However, the semantics document that a part of the standard definition primarily provides a description of the language's syntax and…

Software Engineering · Computer Science 2014-09-25 Andy Evans , Kevin Lano , Robert France , Bernhard Rumpe

The concept of semantic communication provides a novel approach for applications in scenarios with limited communication resources. In this paper, we propose an end-to-end (E2E) semantic molecular communication system, aiming to enhance the…

Signal Processing · Electrical Eng. & Systems 2024-04-16 Yukun Cheng , Wei Chen , Bo Ai

Large Language Models (LLMs) have demonstrated remarkable versatility in recent years, offering potential applications across specialized domains such as healthcare and medicine. Despite the availability of various open-source LLMs tailored…

Computation and Language · Computer Science 2024-07-18 Yanis Labrak , Adrien Bazoge , Emmanuel Morin , Pierre-Antoine Gourraud , Mickael Rouvier , Richard Dufour

Statistical learning is the process of estimating an unknown probabilistic input-output relationship of a system using a limited number of observations. A statistical learning machine (SLM) is the algorithm, function, model, or rule, that…

Machine Learning · Statistics 2026-04-26 Waleed A. Yousef

The development of synthesis procedures remains a fundamental challenge in materials discovery, with procedural knowledge scattered across decades of scientific literature in unstructured formats that are challenging for systematic…

In recent years, the amount of information on the Internet has increased exponentially developing great interest in selective information dissemination systems. The publish/subscribe paradigm is particularly suited for designing systems for…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Ioana Burcea , Milenko Petrovic , Hans-Arno Jacobsen

This paper describes several results of Wimmics, a research lab which names stands for: web-instrumented man-machine interactions, communities, and semantics. The approaches introduced here rely on graph-oriented knowledge representation,…