English
Related papers

Related papers: Analysis Of Cancer Omics Data In A Semantic Web Fr…

200 papers

AI-driven precision oncology has the transformative potential to reshape cancer treatment by leveraging the power of AI models to analyze the interaction between complex patient characteristics and their corresponding treatment outcomes.…

Genomic alterations lead to cancer complexity and form a major hurdle for a comprehensive understanding of the molecular mechanisms underlying oncogenesis. In this review, we describe the recent advances in studying cancer-associated genes…

Molecular Networks · Quantitative Biology 2007-12-24 Edwin Wang , Anne Lenferink , Maureen O'Connor-McCourt

Information retrieval from distributed heterogeneous data sources remains a challenging issue. As the number of data sources increases more intelligent retrieval techniques, focusing on information content and semantics, are required.…

Databases · Computer Science 2007-07-06 K. Munir , M. Odeh , R. McClatchey , S. Khan , I. Habib

The exploration of cellular heterogeneity within the tumor microenvironment (TME) via single-cell RNA sequencing (scRNA-seq) is essential for understanding cancer progression and response to therapy. Current scRNA-seq approaches, however,…

Genomics · Quantitative Biology 2025-02-06 Yu-An Huang , Yue-Chao Li , Hai-Ru You , Jie Pan , Xiyue Cao , Xinyuan Li , Zhi-An Huang , Zhu-Hong You

More information is now being published in machine processable form on the web and, as de-facto distributed knowledge bases are materializing, partly encouraged by the vision of the Semantic Web, the focus is shifting from the publication…

Software Engineering · Computer Science 2016-11-17 Andrea Splendiani , Chris J Rawlings , Shao-Chih Kuo , Robert Stevens , Phillip Lord

The semantic technologies pose new challenge for the way in which we built and operate systems. They are tools used to represent significances, associations, theories, separated from data and code. Their goal is to create, to discover, to…

Software Engineering · Computer Science 2009-03-26 Ioan Despi , Lucian Luca

The Semantic Web, an extension of the current web, provides a common framework that makes data machine understandable and also allows data to be shared and reused across various applications. Resource Description Framework (RDF), a…

Cryptography and Security · Computer Science 2019-12-25 Sara Hosseinzadeh Kassani , Ralph Deters

Clinical oncology generates vast, unstructured data that often contain inconsistencies, missing information, and ambiguities, making it difficult to extract reliable insights for data-driven decision-making. General-purpose large language…

Computation and Language · Computer Science 2025-03-12 Morteza Rohanian , Tarun Mehra , Nicola Miglino , Farhad Nooralahzadeh , Michael Krauthammer , Andreas Wicki

In the field of machine learning, data understanding is the practice of getting initial insights in unknown datasets. Such knowledge-intensive tasks require a lot of documentation, which is necessary for data scientists to grasp the meaning…

Databases · Computer Science 2018-06-14 Markus Schröder , Christian Jilek , Jörn Hees , Andreas Dengel

An increasing amount of information is generated from the rapidly increasing number of sensor networks and smart devices. A wide variety of sources generate and publish information in different formats, thus highlighting interoperability as…

Artificial Intelligence · Computer Science 2017-03-14 Ilias Tachmazidis , Sotiris Batsakis , John Davies , Alistair Duke , Mauro Vallati , Grigoris Antoniou , Sandra Stincic Clarke

In this paper, we introduce the semantic knowledge of medical images from their diagnostic reports to provide an inspirational network training and an interpretable prediction mechanism with our proposed novel multimodal neural network,…

Computer Vision and Pattern Recognition · Computer Science 2017-08-11 Zizhao Zhang , Pingjun Chen , Manish Sapkota , Lin Yang

In this research paper we are briefly presenting current major web problems and introducing semantic web technologies with the claim of solving existing web's problems. Furthermore we are describing Ontology as the main building block of…

Other Computer Science · Computer Science 2010-08-10 Zeeshan Ahmed , Detlef Gerhard

Cancer research is increasingly driven by the integration of diverse data modalities, spanning from genomics and proteomics to imaging and clinical factors. However, extracting actionable insights from these vast and heterogeneous datasets…

Representing knowledge with the use of ontology description languages offers several advantages arising from knowledge reusability, possibilities of carrying out reasoning processes and the use of existing concepts of knowledge integration.…

Multiagent Systems · Computer Science 2013-04-09 Anna Zygmunt , Jarosław Koźlak , Leszek Siwik

Stratifying cancer patients based on their gene expression levels allows improving diagnosis, survival analysis and treatment planning. However, such data is extremely highly dimensional as it contains expression values for over 20000 genes…

Thanks to the development of the Semantic Web, a lot of new structured data has become available on the Web in the form of knowledge bases (KBs). Making this valuable data accessible and usable for end-users is one of the main goals of…

Artificial Intelligence · Computer Science 2018-03-05 Dennis Diefenbach , Andreas Both , Kamal Singh , Pierre Maret

Cancer remains one of the most challenging diseases to treat in the medical field. Machine learning has enabled in-depth analysis of rich multi-omics profiles and medical imaging for cancer diagnosis and prognosis. Despite these…

Machine Learning · Computer Science 2024-01-15 Lingchao Mao , Hairong Wang , Leland S. Hu , Nhan L Tran , Peter D Canoll , Kristin R Swanson , Jing Li

Decision support is a probabilistic and quantitative method designed for modeling problems in situations with ambiguity. Computer technology can be employed to provide clinical decision support and treatment recommendations. The problem of…

Artificial Intelligence · Computer Science 2018-12-06 Ying Shen , Joël Colloc , Armelle Jacquet-Andrieu , Ziyi Guo , Yong Liu

The Semantic Web is an extension of the current web in which information is given well-defined meaning. The perspective of Semantic Web is to promote the quality and intelligence of the current web by changing its contents into machine…

Artificial Intelligence · Computer Science 2012-08-06 Hamed Hassanzadeh , MohammadReza Keyvanpour

With the increased affordability and availability of whole-genome sequencing, large-scale and high-throughput gene expression is widely used to characterize diseases, including cancers. However, establishing specificity in cancer diagnosis…

Machine Learning · Statistics 2018-12-21 Xi Chen , Jin Xie , Qingcong Yuan