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We develop and analyze a model for a flat microbial droplet growing on the surface of a three-dimensional viscous fluid. The model describes growth-induced stresses at the fluid surface, density variations in the bulk due to nutrient…

Fluid Dynamics · Physics 2026-05-20 Vicente Gomez Herrera , Scott Weady

For a fluid of convex hard particles, characterized by a length scale $\sigma_\text{min}$ and an anisotropy parameter $\epsilon$, we develop a formalism allowing one to relate thermodynamic quantities to the body's shape. In a first step…

Statistical Mechanics · Physics 2025-06-17 Thomas Franosch , Cristiano De Michele , Rolf Schilling

We consider a free boundary problem for a system of PDEs, modeling the growth of a biological tissue. A morphogen, controlling volume growth, is produced by specific cells and then diffused and absorbed throughout the domain. The geometric…

Analysis of PDEs · Mathematics 2017-11-22 Alberto Bressan , Marta Lewicka

Accretion of mineralized thin wall-like structures via localized growth along their edges is observed in a range of physical and biological systems ranging from molluscan and brachiopod shells to carbonate-silica composite precipitates. To…

Soft Condensed Matter · Physics 2022-02-23 C. Nadir Kaplan , L. Mahadevan

A continuous transformation from a closed vesicle to an open vesicle needs that the area of open hole enlarge from zero. Since the shape equation and boundary conditions of lipid open vesicles with free edges have been obtained, we want…

Soft Condensed Matter · Physics 2019-09-04 Xiaohua Zhou

We present a general and systematic theory of non-equilibrium dynamics of multi-component fluid membranes, in general, and membranes containing transmembrane proteins, in particular. Developed based on a minimal number of principles of…

Soft Condensed Matter · Physics 2009-11-10 Michael A. Lomholt , Per L. Hansen , Ling Miao

Fluid membranes made out of lipid bilayers are the fundamental separation structure in eukaryotic cells. Many physiological processes rely on dramatic shape and topological changes (e.g. fusion, fission) of fluid membrane systems. Fluidity…

Numerical Analysis · Mathematics 2010-07-29 Marino Arroyo , Antonio DeSimone , Luca Heltai

Osmotic deflation of vesicles enclosing two liquid phases can lead to bulging of one of the phases from the vesicle body. This budding process is preceded by a complete to partial wetting transition of one of the liquid phases on the…

Soft Condensed Matter · Physics 2012-01-17 Yanhong Li , Halim Kusumaatmaja , Reinhard Lipowsky , Rumiana Dimova

We study the influence of particle shape on growth processes at the edges of evaporating drops. Aqueous suspensions of colloidal particles evaporate on glass slides, and convective flows during evaporation carry particles from drop center…

Soft Condensed Matter · Physics 2015-06-11 Peter J. Yunker , Matthew A. Lohr , Tim Still , Alexei Borodin , D. J. Durian , A. G. Yodh

A micelle consists of monolayer of lipid molecules containing hydrophilic head and hydrophobic tail. These amphiphilic molecules in aqueous environment aggregate spontaneously into monomolecular layer held together due to hydrophobic effect…

Biological Physics · Physics 2016-08-05 David V. Svintradze

We describe an algorithm for identifying ellipsoidal haloes in numerical simulations, and quantify how the resulting estimates of halo mass and shape differ with respect to spherical halo finders. Haloes become more prolate when fit with…

Cosmology and Nongalactic Astrophysics · Physics 2013-03-19 Giulia Despali , Giuseppe Tormen , Ravi K. Sheth

An analytic solution for Helfrich spontaneous curvature membrane model (H. Naito, M.Okuda and Ou-Yang Zhong-Can, Phys. Rev. E {\bf 48}, 2304 (1993); {\bf 54}, 2816 (1996)), which has a conspicuous feature of representing the circular…

Soft Condensed Matter · Physics 2009-10-31 Quan-Hui Liu , Zhou Haijun , Ji-Xing Liu , Ou-Yang Zhong-Can

Mathematical models of biological growth commonly attempt to distinguish deformation due to growth from that due to mechanical stresses through a hypothesised multiplicative decomposition of the deformation gradient. Here we demonstrate…

Mathematical Physics · Physics 2012-10-29 Isaac Vikram Chenchiah , Patrick D. Shipman

We propose a systematic expansion method which is applied to freely evolving granular fluids contained in sufficiently small systems. Restricting ourselves to small systems, we show that there exists a small parameter which characterizes a…

Statistical Mechanics · Physics 2007-05-23 J. Wakou

By means of Surface Evolver (Exp. Math,1,141 1992), a software package of brute-force energy minimization over a triangulated surface developed by the geometry center of University of Minnesota, we have numerically searched the…

Biological Physics · Physics 2009-10-31 Yan Jie , Liu Quan-Hui , Liu Ji-Xing , Ou-Yang Zhong-Can

We develop a method for investigating the relationship between the shape of a 1-particle distribution and non-linear electrostatic oscillations in a collisionless plasma, incorporating transverse thermal motion. A general expression is…

Plasma Physics · Physics 2008-07-30 D. A. Burton , A. Noble

While it is well-understood what a normal human placenta should look like, a deviation from the norm can take many possible shapes. In this paper we propose a mechanism for this variability based on the change in the structure of the…

Tissues and Organs · Quantitative Biology 2008-01-03 Michael Yampolsky , Carolyn M. Salafia , Oleksandr Shlakhter , Danielle Haas , Barbara Eucker , John Thorp

Lipid vesicles appear ubiquitously in biological systems. Understanding how the mechanical and intermolecular interations deform vesicle membrane is a fundamental question in biophysics. In this article we developed a fast algorithm to…

Numerical Analysis · Mathematics 2014-11-17 Michael Mikucki , Y. C. Zhou

We investigate the static and dynamic properties of a weakly polydisperse hard sphere system in the deeply supercooled state, i.e. at densities higher than that corresponding to the mode-coupling transition. The structural analysis reveals…

Soft Condensed Matter · Physics 2017-12-27 C. Patrick Royall , Walter Kob

The interplay between geometry, topology and order can lead to geometric frustration that profoundly affects the shape and structure of a curved surface. In this commentary we show how frustration in this context can result in the faceting…

Soft Condensed Matter · Physics 2016-02-02 Mark Bowick , Rastko Sknepnek
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