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Network alignment aims to find regions of topological or functional similarities between networks. In computational biology, it can be used to transfer biological knowledge from a well-studied species to a poorly-studied species between…

Molecular Networks · Quantitative Biology 2014-10-21 Joseph Crawford , Tijana Milenković

In random systems consisting of grains with size distributions the transport properties are difficult to explore by network models. However, the concentration dependence of effective conductivity and its critical properties can be…

Statistical Mechanics · Physics 2007-05-23 Ryszard Piasecki

While Graph Neural Network (GNN) has shown superiority in learning node representations of homogeneous graphs, leveraging GNN on heterogeneous graphs remains a challenging problem. The dominating reason is that GNN learns node…

Social and Information Networks · Computer Science 2020-09-22 Ziyue Qiao , Pengyang Wang , Yanjie Fu , Yi Du , Pengfei Wang , Yuanchun Zhou

Graph pattern matching, one of the fundamental graph mining problems, aims to extract structural patterns of interest from an input graph. The state-of-the-art graph matching algorithms and systems are mainly designed for undirected graphs.…

Databases · Computer Science 2024-04-18 Pingpeng Yuan , Yujiang Wang , Tianyu Ma , Siyuan He , Ling Liu

In many real, directed networks, the strongly connected component of nodes which are mutually reachable is very small. This does not fit with current theory, based on random graphs, according to which strong connectivity depends on mean…

Disordered Systems and Neural Networks · Physics 2023-04-12 Niall Rodgers , Peter Tino , Samuel Johnson

The aim of this work is to develop a fully-distributed algorithmic framework for training graph convolutional networks (GCNs). The proposed method is able to exploit the meaningful relational structure of the input data, which are collected…

Machine Learning · Computer Science 2022-12-21 Simone Scardapane , Indro Spinelli , Paolo Di Lorenzo

The angular synchronization problem aims to accurately estimate (up to a constant additive phase) a set of unknown angles $\theta_1, \dots, \theta_n\in[0, 2\pi)$ from $m$ noisy measurements of their offsets $\theta_i-\theta_j \;\mbox{mod}…

Machine Learning · Computer Science 2024-02-13 Yixuan He , Gesine Reinert , David Wipf , Mihai Cucuringu

Graph representation learning is a fundamental task in various applications that strives to learn low-dimensional embeddings for nodes that can preserve graph topology information. However, many existing methods focus on static graphs while…

Machine Learning · Computer Science 2020-11-09 Jingxin Liu , Chang Xu , Chang Yin , Weiqiang Wu , You Song

Non-Hermitian physics enables novel control over open quantum and wave systems, but selectively isolating individual modes without delicate balancing of gain and loss remains challenging. Here we introduce a gauge-engineering method in…

Quantum Physics · Physics 2026-05-18 Wenwen Liu , Zhang Shuang

A Temporal Knowledge Graph (TKG) is a sequence of KGs corresponding to different timestamps. TKG reasoning aims to predict potential facts in the future given the historical KG sequences. One key of this task is to mine and understand…

Artificial Intelligence · Computer Science 2022-03-22 Zixuan Li , Saiping Guan , Xiaolong Jin , Weihua Peng , Yajuan Lyu , Yong Zhu , Long Bai , Wei Li , Jiafeng Guo , Xueqi Cheng

The analysis of small recurrent substructures, so called network motifs, has become a standard tool of complex network science to unveil the design principles underlying the structure of empirical networks. In many natural systems network…

Quantitative Methods · Quantitative Biology 2015-07-08 Pavel V. Paulau , Christoph Feenders , Bernd Blasius

The theoretical description of synchronization phenomena often relies on coupled units of continuous time noisy Markov chains with a small number of states in each unit. It is frequently assumed, either explicitly or implicitly, that…

Adaptation and Self-Organizing Systems · Physics 2016-12-21 Daniel Escaff , Alexandre Rosas , Raul Toral , Katja Lindenberg

We study coarse-graining methods for stochastic differential equations. In particular we consider averaging and a type of projection operator method, sometimes referred to as effective dynamic via conditional expectations. The projection…

Probability · Mathematics 2025-06-19 Manh Hong Duong , Carsten Hartmann , Michela Ottobre

The synchronization pattern of a fully connected competing Kuramoto model with a uniform intrinsic frequency distribution $g(\omega)$ was recently considered. This competing Kuramoto model assigns two coupling constants with opposite signs,…

Statistical Mechanics · Physics 2020-09-04 Jinha Park , B. Kahng

Network inference has been extensively studied in several fields, such as systems biology and social sciences. Learning network topology and internal dynamics is essential to understand mechanisms of complex systems. In particular, sparse…

Machine Learning · Statistics 2022-06-13 Yasen Wang , Junyang Jin , Jorge Goncalves

As large-scale graphs become increasingly more prevalent, it poses significant computational challenges to process, extract and analyze large graph data. Graph coarsening is one popular technique to reduce the size of a graph while…

Machine Learning · Computer Science 2021-02-03 Chen Cai , Dingkang Wang , Yusu Wang

We investigate how various coarse-graining methods affect the scaling properties of long-range power-law correlated and anti-correlated signals, quantified by the detrended fluctuation analysis. Specifically, for coarse-graining in the…

Data Analysis, Statistics and Probability · Physics 2015-05-18 Yinlin Xu , Qianli D. Y. Ma , Daniel T. Schmitt , Pedro Bernaola-Galván , Plamen Ch. Ivanov

Directed graphs model asymmetric relationships between nodes and research on directed graph embedding is of great significance in downstream graph analysis and inference. Learning source and target embedding of nodes separately to preserve…

Social and Information Networks · Computer Science 2022-11-07 Linsong Liu , Kejia Chen , Zheng Liu

This work is dedicated to the topological analysis of complex transitional networks for dynamic state detection. Transitional networks are formed from time series data and they leverage graph theory tools to reveal information about the…

Machine Learning · Statistics 2023-08-08 Audun D. Myers , Max M. Chumley , Firas A. Khasawneh , Elizabeth Munch

The robustness of synchronization is typically characterized by scalar, per-node stability indices whose dependence on topology is studied via network science or graph neural networks (GNNs). We propose a novel upstream task, learning…

Machine Learning · Computer Science 2026-05-25 Christian Nauck , Junyou Zhu , Michael Lindner , Frank Hellmann
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