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Recent advances in both theory and methods have created opportunities to simulate biomolecular processes more efficiently using adaptive ensemble simulations. Ensemble-based simulations are used widely to compute a number of individual…

Computational Engineering, Finance, and Science · Computer Science 2020-09-14 Vivek Balasubramanian , Travis Jensen , Matteo Turilli , Peter Kasson , Michael Shirts , Shantenu Jha

Controlled experiments are a core research method in software engineering (SE) for validating causal claims. However, recruiting a sample of participants that represents the intended target population is often difficult or expensive, which…

Software Engineering · Computer Science 2026-04-27 Julian Frattini , Richard Torkar , Robert Feldt , Carlo A. Furia

Multiscale and multiphysics applications are now commonplace, and many researchers focus on combining existing models to construct combined multiscale models. Here we present a concise review of multiscale applications and their source…

Other Computer Science · Computer Science 2013-05-24 Derek Groen , Stefan J. Zasada , Peter V. Coveney

Within academia and industry, there has been a need for expansive simulation frameworks that include model-based simulation of sensors, mobile vehicles, and the environment around them. To this end, the modular, real-time, and open-source…

There is a growing demand for simulators for the research and development of maritime autonomous surface ships (MASS) and the approval of autonomous navigation algorithms. Simulators are used for purposes such as evaluation and training and…

Systems and Control · Electrical Eng. & Systems 2024-07-30 Ryouhei Sawada , Yoshiki Miyauchi , Suisei Wada , Takuya Tanigushi , Satoru Hamada , Hiroaki Koike , Kouki Wakita , Atsuo Maki

Transportation problems of large urban conurbations inspire search for new transportation systems, that meet high environmental standards, are relatively cheap and user friendly. The latter element also includes the needs of disabled and…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-21 Włodzimierz Choromański , Wiktor Daszczuk , Jarosław Dyduch , Mariusz Maciejewski , Paweł Brach , Waldemar Grabski

In this paper, we argue that simulation platforms enable a novel type of embodied spatial reasoning, one facilitated by a formal model of object and event semantics that renders the continuous quantitative search space of an open-world,…

Artificial Intelligence · Computer Science 2019-02-07 James Pustejovsky , Nikhil Krishnaswamy

Quantum Computing promises accelerated simulation of certain classes of problems, in particular in plasma physics. Given the nascent interest in applying quantum computing techniques to study plasma systems, a compendium of the relevant…

Plasma Physics · Physics 2023-02-02 Óscar Amaro , Diogo Cruz

This paper addresses the challenge of ensuring realistic traffic conditions by proposing a methodology that systematically identifies traffic simulation requirements. Using a structured approach based on sub-goals in each study phase,…

Software Engineering · Computer Science 2025-10-17 Sven Tarlowski , Lutz Eckstein

A critical issue in the evolution of software models is change propagation: given a primary change that is made to a model in order to meet a new or changed requirement, what additional secondary changes are needed to maintain consistency…

Software Engineering · Computer Science 2014-02-26 Hoa Khanh Dam , Aditya Ghose

Technologies based on the use of hydrogen are promising for future energy requirements in a more sustainable world. Consequently, modelling fuel cells is crucial, for instance, to optimize their control to achieve excellent performance, to…

Systems and Control · Electrical Eng. & Systems 2024-10-18 Raphaël Gass , Zhongliang Li , Rachid Outbib , Samir Jemei , Daniel Hissel

Integrative biological simulations have a varied and controversial history in the biological sciences. From computational models of organelles, cells, and simple organisms, to physiological models of tissues, organ systems, and ecosystems,…

Quantitative Methods · Quantitative Biology 2017-12-06 Gopal P. Sarma , Victor Faundez

In particle-in-cell simulations, excessive or even unfeasible computational demands can be caused by the growth of the number of particles in the course of prolific ionization or cascaded pair production due to the effects of quantum…

Computational Physics · Physics 2021-01-25 A. Muraviev , A. Bashinov , E. Efimenko , V. Volokitin , I. Meyerov , A. Gonoskov

In this position paper, we discuss recent applications of simulation approaches for recommender systems tasks. In particular, we describe how they were used to analyze the problem of misinformation spreading and understand which data…

Information Retrieval · Computer Science 2021-10-11 Alejandro Bellogín , Yashar Deldjoo

A brief review is presented of the scaling of complex fluids, polymers and polyelectrolytes in solution and in confined geometry, in thermodynamical, structural and rheology properties using equilibrium and nonequilibrium dissipative…

Soft Condensed Matter · Physics 2016-12-06 Armando Gama Goicochea

A large scientific community depends on the precise modelling of complex processes in particle cascades in various types of matter. These models are used most prevalently in cosmic-ray physics, astrophysical-neutrino physics, and gamma-ray…

Instrumentation and Methods for Astrophysics · Physics 2018-12-20 Ralph Engel , Dieter Heck , Tim Huege , Tanguy Pierog , Maximilian Reininghaus , Felix Riehn , Ralf Ulrich , Michael Unger , Darko Veberič

During the past decades, quantum mechanical methods have undergone an amazing transition from pioneering investigations of experts into a wide range of practical applications, made by a vast community of researchers. First principles…

Chemical Physics · Physics 2016-11-09 Laura E. Ratcliff , Stephan Mohr , Georg Huhs , Thierry Deutsch , Michel Masella , Luigi Genovese

This paper presents the design, development, and application of a novel space simulation environment for rapidly prototyping and testing flight software for distributed space systems. The environment combines the flexibility, determinism,…

Software Engineering · Computer Science 2025-05-20 Toby Bell , Simone D'Amico

Much of our mechanistic understanding of the functions of biological macromolecules is based on static structural experiments, which can be modelled either as single structures or conformational ensembles. While these provide us with…

Biomolecules · Quantitative Biology 2025-10-02 Daria Gusew , Carl G. Henning Hansen , Kresten Lindorff-Larsen