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Over the past decade, deep neural networks have proven to be adept in image classification tasks, often surpassing humans in terms of accuracy. However, standard neural networks often fail to understand the concept of hierarchical…

Computer Vision and Pattern Recognition · Computer Science 2022-06-15 Amitangshu Mukherjee , Isha Garg , Kaushik Roy

Extracting understanding from the growing ``sea'' of biological and socio-economic data is one of the most pressing scientific challenges facing us. Here, we introduce and validate an unsupervised method that is able to accurately extract…

Physics and Society · Physics 2009-11-13 M. Sales-Pardo , R. Guimera , A. Moreira , L. Amaral

Using each node's degree as a proxy for its importance, the topological hierarchy of a complex network is introduced and quantified. We propose a simple dynamical process used to construct networks which are either maximally or minimally…

Soft Condensed Matter · Physics 2008-06-24 Ala Trusina , Sergei Maslov , Petter Minnhagen , Kim Sneppen

Chain graphs combine directed and undirected graphs and their underlying mathematics combines properties of the two. This paper gives a simplified definition of chain graphs based on a hierarchical combination of Bayesian (directed) and…

Artificial Intelligence · Computer Science 2013-02-21 Wray L. Buntine

We introduce a class of random graphs with a community structure, which we call the hierarchical configuration model. On the inter-community level, the graph is a configuration model, and on the intra-community level, every vertex in the…

Probability · Mathematics 2016-12-16 Remco van der Hofstad , Johan S. H. van Leeuwaarden , Clara Stegehuis

This paper studies distribution-free inference in settings where the data set has a hierarchical structure -- for example, groups of observations, or repeated measurements. In such settings, standard notions of exchangeability may not hold.…

Statistics Theory · Mathematics 2025-08-05 Yonghoon Lee , Rina Foygel Barber , Rebecca Willett

Directed cycles form the fundamental motifs in natural, social and artificial networks, yet their distinct computational roles remain under-explored, particularly in the context of higher-order structure and function. In this work, we…

Statistical Mechanics · Physics 2025-08-14 Hardik Rajpal , Paul Expert , Vaiva Vasiliauskaite

The representation of complex systems as networks is inappropriate for the study of certain problems. We show several examples of social, biological, ecological and technological systems where the use of complex networks gives very limited…

Physics and Society · Physics 2013-04-02 Ernesto Estrada , Juan A. Rodriguez-Velazquez

Predicting the fate of ecologies is a daunting, albeit extremely important, task. As part of this task one needs to develop an understanding of the organization, hierarchies, and correlations among the species forming the ecology. Focusing…

Populations and Evolution · Quantitative Biology 2016-08-31 Ahmed Roman , Debanjan Dasgupta , Michel Pleimling

A large number of complex systems, naturally emerging in various domains, are well described by directed networks, resulting in numerous interesting features that are absent from their undirected counterparts. Among these properties is a…

Physics and Society · Physics 2021-05-19 Joseph D. O'Brien , Kleber A. Oliveira , James P. Gleeson , Malbor Asllani

This paper considers networks where relationships between nodes are represented by directed dissimilarities. The goal is to study methods that, based on the dissimilarity structure, output hierarchical clusters, i.e., a family of nested…

Machine Learning · Computer Science 2016-07-22 Gunnar Carlsson , Facundo Mémoli , Alejandro Ribeiro , Santiago Segarra

Bayesian hierarchical models are frequently used in practical data analysis contexts. One interpretation of these models is that they provide an indirect way of assigning a prior for unknown parameters, through the introduction of…

Machine Learning · Statistics 2026-05-01 Brendon J. Brewer

This paper considers metric spaces where distances between a pair of nodes are represented by distance intervals. The goal is to study methods for the determination of hierarchical clusters, i.e., a family of nested partitions indexed by a…

Social and Information Networks · Computer Science 2016-10-17 Weiyu Huang , Alejandro Ribeiro

Identifying meaningful structure across multiple scales remains a central challenge in network science. We introduce Hierarchical Clustering Entropy (HCE), a general and model-agnostic framework for detecting informative levels in…

Social and Information Networks · Computer Science 2025-08-07 Jorge Martinez Armas

Many classification problems consider classes that form a hierarchy. Classifiers that are aware of this hierarchy may be able to make confident predictions at a coarse level despite being uncertain at the fine-grained level. While it is…

Machine Learning · Computer Science 2023-02-13 Jack Valmadre

Hierarchies are of fundamental interest in both stochastic optimal control and biological control due to their facilitation of a range of desirable computational traits in a control algorithm and the possibility that they may form a core…

Systems and Control · Computer Science 2018-01-09 Daniel McNamee

The relations, rather than the elements, constitute the structure of networks. We therefore develop a systematic approach to the analysis of networks, modelled as graphs or hypergraphs, that is based on structural properties of…

Discrete Mathematics · Computer Science 2020-12-08 Marzieh Eidi , Amirhossein Farzam , Wilmer Leal , Areejit Samal , Jürgen Jost

Graph generation is one of the most challenging tasks in recent years, and its core is to learn the ground truth distribution hiding in the training data. However, training data may not be available due to security concerns or unaffordable…

Discrete Mathematics · Computer Science 2025-03-11 Xiaorui Qi , Yanlong Wen , Xiaojie Yuan

In many classification tasks, the set of target classes can be organized into a hierarchy. This structure induces a semantic distance between classes, and can be summarised under the form of a cost matrix, which defines a finite metric on…

Machine Learning · Computer Science 2021-11-30 Vivien Sainte Fare Garnot , Loic Landrieu

Many applications collect a large number of time series, for example, the financial data of companies quoted in a stock exchange, the health care data of all patients that visit the emergency room of a hospital, or the temperature sequences…

Information Theory · Computer Science 2017-02-09 Jonathan Mei , José M. F. Moura