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We demonstrate the effects of embedding subgraphs using a Boolean network, which is one of the discrete dynamical models for transcriptional regulatory networks. After comparing the dynamical properties of network embedded seven different…

Cellular Automata and Lattice Gases · Physics 2008-06-26 Chikoo Oosawa , Michael A. Savageau , Abdul S. Jarrah , Reinhard C. Laubenbacher , Eduardo D. Sontag

We study the versatile performance of networks of coupled circuits. Each of these circuits is composed of a positive and a negative feedback loop in a motif that is frequently found in genetic and neural networks. When two of these circuits…

Adaptation and Self-Organizing Systems · Physics 2015-06-22 Darka Labavić , Hildegard Meyer-Ortmanns

This paper is devoted to the study of nonautonomous multivalued semiflows and their associated pullback attractors. For this kind of dynamical systems we are able to characterize the upper and lower bounds of the attractor as complete…

Dynamical Systems · Mathematics 2024-07-04 José A. Langa , Jacson Simsen , Mariza Stefanello Simsen , José Valero

A Boolean network is a mapping $f :\{0,1\}^n \to \{0,1\}^n$, which can be used to model networks of $n$ interacting entities, each having a local Boolean state that evolves over time according to a deterministic function of the current…

Combinatorics · Mathematics 2021-04-29 Maximilien Gadouleau

In this paper we study the problem of dynamically maintaining graph properties under batches of edge insertions and deletions in the massively parallel model of computation. In this setting, the graph is stored on a number of machines, each…

Data Structures and Algorithms · Computer Science 2019-08-07 David Durfee , Laxman Dhulipala , Janardhan Kulkarni , Richard Peng , Saurabh Sawlani , Xiaorui Sun

We study the dynamics of billiard models with a modified collision rule: the outgoing angle from a collision is a uniform contraction, by a factor lambda, of the incident angle. These pinball billiards interpolate between a one-dimensional…

Dynamical Systems · Mathematics 2009-06-11 Aubin Arroyo , Roberto Markarian , David P. Sanders

Asynchronous Boolean networks are a type of discrete dynamical system in which each variable can take one of two states, and a single variable state is updated in each time step according to pre-selected rules. Boolean networks are popular…

Molecular Networks · Quantitative Biology 2024-10-08 Samuel Pastva , Kyu Hyong Park , Ondrej Huvar , Jordan C Rozum , Reka Albert

Boolean networks have been the object of much attention, especially since S. Kauffman proposed them in the 1960's as models for gene regulatory networks. These systems are characterized by being defined on a Boolean state space and by…

Molecular Networks · Quantitative Biology 2007-11-21 German A. Enciso , Winfried Just

In this paper, based on the classic Chua's circuit, a charge-controlled memristor is introduced to design a novel four-dimensional chaotic system. The complex dynamics of the novel chaotic system such as equilibrium points, stability,…

Chaotic Dynamics · Physics 2020-09-03 S. H. Yan , Z. L. Song , W. L. Shi , W. L. Zhao

We study critical random Boolean networks with two inputs per node that contain only canalyzing functions. We present a phenomenological theory that explains how a frozen core of nodes that are frozen on all attractors arises. This theory…

Statistical Mechanics · Physics 2009-11-11 U. Paul , V. Kaufman , B. Drossel

In neuroscience, optics and condensed matter there is ample physical evidence for multistable dynamical systems, that is, systems with a large number of attractors. The known mathematical mechanisms that lead to multiple attractors are…

chao-dyn · Physics 2007-05-23 R. Vilela Mendes

We conceive finite automata as dynamical systems on discontinuum and investigate their factors. Factors of finite automata include many well-known simple dynamical systems, e.g. hyperbolic systems and systems with finite attractors. In the…

chao-dyn · Physics 2008-02-03 Petr Kurka

The jam phases in a two-dimensional cellular automata model of traffic flow are investigated by computer simulations. Two different types of the jam phases are found. The spatially diagonal long-range correlation obeys the power law at the…

patt-sol · Physics 2009-10-28 Shin-ichi Tadaki , Macoto Kikuchi

We provide conditions on the coupling function such that a system of 4 globally coupled identical oscillators has chaotic attractors, a pair of Lorenz attractors or a 4-winged analogue of the Lorenz attractor. The attractors emerge near the…

Chaotic Dynamics · Physics 2024-08-14 Efrosiniia Karatetskaia , Alexey Kazakov , Klim Safonov , Dmitry Turaev

In this paper we consider an attracting heteroclinic cycle made by a 1-dimensional and a 2-dimensional separatrices between two hyperbolic saddles having complex eigenvalues. The basin of the global attractor exhibits historic behaviour…

Dynamical Systems · Mathematics 2018-07-04 Maria Carvalho , Alexandre A. P. Rodrigues

We study the dynamics of discrete-time regulatory networks on random digraphs. For this we define ensembles of deterministic orbits of random regulatory networks, and introduce some statistical indicators related to the long-term dynamics…

Dynamical Systems · Mathematics 2009-11-13 Anne Cros , Antonio Morante , Edgardo Ugalde

We consider an autonomous system constructed as modification of the logistic differential equation with delay that generates successive trains of oscillations with phases evolving according to chaotic maps. The system contains two feedback…

Chaotic Dynamics · Physics 2014-04-17 D. S. Arzhanukhina , S. P. Kuznetsov

We propose a distributed control, in which many identical control agents are deployed for controlling a linear time-invariant plant that has multiple input-output channels. Each control agent can join or leave the control loop during the…

Systems and Control · Electrical Eng. & Systems 2022-12-20 Taekyoo Kim , Donggil Lee , Hyungbo Shim

We study the coupling between mechanical motion and Dirac electrons in a dynamical sheet of graphene. We show that this coupling can be understood in terms of an effective gauge field acting on the electrons, which has two contributions:…

Mesoscale and Nanoscale Physics · Physics 2015-06-11 Mircea Trif , Pramey Upadhyaya , Yaroslav Tserkovnyak

Systems with the coexistence of different stable attractors are widely exploited in systems biology in order to suitably model the differentiating processes arising in living cells. In order to describe genetic regulatory networks several…

Dynamical Systems · Mathematics 2010-07-16 V. Lanza , L. Ponta , M. Bonnin , F. Corinto