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This work presents some characteristics of MoNet, a digital platform for the modeling and visualization of complex systems. Emphasis is on the ideas that allowed the successful progressive development of this modeling platform, which goes…

Software Engineering · Computer Science 2020-09-01 Gerardo L. Febres

Atomistic simulations have become a powerful tool in materials research due to the extremely fine spatial and temporal resolution provided by such techniques. In order to understand the fundamental principles which govern material behavior…

Materials Science · Physics 2014-08-26 Jason F. Panzarino , Timothy J. Rupert

Numerical relativity simulations are crucial for studying black holes and have been instrumental in the detection of gravitational waves by the LVK. However, these simulations produce vast amounts of data that must be processed in order to…

Since Lorenz's seminal work on a simplified weather model, the numerical analysis of nonlinear dynamical systems has become one of the main subjects of research in physics. Despite of that, there remains a need for accessible, efficient,…

SkyPy is an open-source Python package for simulating the astrophysical sky. It comprises a library of physical and empirical models across a range of observables and a command-line script to run end-to-end simulations. The library provides…

Astronomical observations, analytical solutions and numerical simulations have provided the building blocks to formulate the current theory of young stellar object jets. Although each approach has made great progress independently, it is…

Solar and Stellar Astrophysics · Physics 2015-06-18 O. Tesileanu , T. Matsakos , S. Massaglia , E. Trussoni , A. Mignone , N. Vlahakis , K. Tsinganos , M. Stute , V. Cayatte , C. Sauty , C. Stehle , J. -P. Chieze

Atom probe tomography (APT) has matured to a versatile nanoanalytical characterization tool with applications that range from materials science to geology and possibly beyond. Already, well over 100 APT microscopes exist worldwide.…

Computational Physics · Physics 2020-04-14 Markus Kühbach , Priyanshu Bajaj , Murat Han Celik , Eric Aimo Jägle , Baptiste Gault

TOPCAT is a desktop application for interactive analysis of tabular data, especially source catalogues. Along with its command-line counterpart STILTS, it has been under more or less continuous development for the past 15 years and is now…

Instrumentation and Methods for Astrophysics · Physics 2017-11-07 Mark Taylor

Long lived software projects encompass a large number of artifacts, which undergo many revisions throughout their history. Empirical software engineering researchers studying software evolution gather and collect datasets with millions of…

Software Engineering · Computer Science 2025-08-15 Souhaila Serbout , Diana Carolina Muñoz Hurtado , Hassan Atwi , Edoardo Riggio , Cesare Pautasso

A number of new functionalities have been added to the Alloy Theoretic Automated Toolkit (ATAT) since it was last reviewed in this journal in 2002. ATAT can now handle multicomponent multisublattice alloy systems, nonconfigurational sources…

Materials Science · Physics 2025-06-11 Axel van de Walle

Sophisticated visualization tools are essential for the presentation and exploration of human neuroimaging data. While two-dimensional orthogonal views of neuroimaging data are conventionally used to display activity and statistical…

Computational physics increasingly depends on large simulation datasets generated by software that remains under active development for many years. In such settings, reproducibility requires not only well documented data but also explicit…

Computational Physics · Physics 2026-04-30 Markus Uehlein , Tobias Held , Christopher Seibel , Lukas G. Jonda , Baerbel Rethfeld , Sebastian T. Weber

Interactive data visualization is a major part of modern exploratory data analysis, with web-based technologies enabling a rich ecosystem of both specialized and general tools. However, current visualization tools often lack support for…

Human-Computer Interaction · Computer Science 2025-08-14 Jan Simson

TOPCAT is a widely used desktop application for manipulation of astronomical catalogues and other tables, which has long provided fast interactive visualisation features including 1, 2 and 3-d plots, multiple datasets, linked views, color…

Instrumentation and Methods for Astrophysics · Physics 2014-10-27 Mark Taylor

A stand-alone App has been developed, focused on obtaining information about relevant engineering properties of magnetic levitation systems. Our modelling toolkit provides real time simulations of 2D magneto-mechanical quantities for…

Physics Education · Physics 2016-12-30 J. Peña-Roche , A. Badia-Majos

We present an open source Python library for simulating overlapping (i.e., blended) images of galaxies and performing self-consistent comparisons of detection and deblending algorithms based on a suite of metrics. The package, named…

Over the last few years, data analytics shifted from a descriptive era, confined to the explanation of past events, to the emergence of predictive techniques. Nonetheless, existing predictive techniques still fail to effectively explore…

Databases · Computer Science 2018-03-28 Thomas Hartmann , Francois Fouquet , Assaad Moawad , Romain Rouvoy , Yves Le Traon

Given the growth in the variety and precision of astronomical datasets of interest for cosmology, the best cosmological constraints are invariably obtained by combining data from different experiments. At the likelihood level, one…

Cosmology and Nongalactic Astrophysics · Physics 2024-09-04 Arrykrishna Mootoovaloo , Carlos García-García , David Alonso , Jaime Ruiz-Zapatero

An approach for incorporating embedded simulation and analysis capabilities in complex simulation codes through template-based generic programming is presented. This approach relies on templating and operator overloading within the C++…

Mathematical Software · Computer Science 2012-05-17 Roger P. Pawlowski , Eric T. Phipps , Andrew G. Salinger

Small and wide angle x-ray scattering tensor tomography are powerful methods for studying anisotropic nanostructures in a volume-resolved manner, and are becoming increasingly available to users of synchrotron facilities. The analysis of…

Materials Science · Physics 2025-04-24 Leonard C. Nielsen , Mads Carlsen , Sici Wang , Arthur Baroni , Torne Tänzer , Marianne Liebi , Paul Erhart
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