Related papers: Counting Colours in Compressed Strings
We show that the compressed suffix array and the compressed suffix tree of a string $T$ can be built in $O(n)$ deterministic time using $O(n\log\sigma)$ bits of space, where $n$ is the string length and $\sigma$ is the alphabet size.…
Coloring graphs is an important algorithmic problem in combinatorics with many applications in computer science. In this paper we study coloring tournaments. A chromatic number of a random tournament is of order $\Omega(\frac{n}{\log(n)})$.…
Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in $O(k.n)$-time where n is the length of the string and k is the…
In this paper, we present a new data structure called the packed compact trie (packed c-trie) which stores a set $S$ of $k$ strings of total length $n$ in $n \log\sigma + O(k \log n)$ bits of space and supports fast pattern matching queries…
We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…
The dynamics of closed cosmic strings in Peres background, using finite-difference method, has been considered. It is shown that motion of the strings is very complicated and its perform complex oscillations and deformed to form loops and…
We, for anti-quantum computing, will discuss various number-based strings, such as number-based super-strings, parameterized strings, set-based strings, graph-based strings, integer-partitioned and integer-decomposed strings, Hanzi-based…
The problem of string reconstruction based on its substrings spectrum has received significant attention recently due to its applicability to DNA data storage and sequencing. In contrast to previous works, we consider in this paper a setup…
We investigate symbolic sequences and in particular information carriers as e.g. books and DNA--strings. First the higher order Shannon entropies are calculated, a characteristic root law is detected. Then the algorithmic entropy is…
We describe how, given a text $T [1..n]$ and a positive constant $\epsilon$, we can build a simple $O (z \log n)$-space index, where $z$ is the number of phrases in the LZ77 parse of $T$, such that later, given a pattern $P [1..m]$, in $O…
The Subset Sum problem asks whether a given set of $n$ positive integers contains a subset of elements that sum up to a given target $t$. It is an outstanding open question whether the $O^*(2^{n/2})$-time algorithm for Subset Sum by…
We consider the problem of dictionary matching in a stream. Given a set of strings, known as a dictionary, and a stream of characters arriving one at a time, the task is to report each time some string in our dictionary occurs in the…
The classic string indexing problem is to preprocess a string S into a compact data structure that supports efficient pattern matching queries. Typical queries include existential queries (decide if the pattern occurs in S), reporting…
Utilizing the hyperspace of noise-based logic, we show two string verification methods with low communication complexity. One of them is based on continuum noise-based logic. The other one utilizes noise-based logic with random telegraph…
Let $P$ be a set of $n$ colored points. We develop efficient data structures that store $P$ and can answer chromatic $k$-nearest neighbor ($k$-NN) queries. Such a query consists of a query point $q$ and a number $k$, and asks for the color…
We revisit the problem of finding shortest unique substring (SUS) proposed recently by [6]. We propose an optimal $O(n)$ time and space algorithm that can find an SUS for every location of a string of size $n$. Our algorithm significantly…
We investigate symbolic sequences and in particular information carriers as e.g. books and DNA-strings. First the higher order Shannon entropies are calculated, a characteristic root law is detected. Then the algorithmic entropy is…
Large-alphabet strings are common in scenarios such as information retrieval and natural-language processing. The efficient storage and processing of such strings usually introduces several challenges that are not witnessed in…
Identifying regularities in strings, such as \emph{periods} and \emph{covers}, is crucial for applications in text compression, computational biology, and pattern recognition. \emph{Characters-Distance-Sampling} (\texttt{CDS}) is an…
The problem of reconstructing strings from substring information has found many applications due to its importance in genomic data sequencing and DNA- and polymer-based data storage. One practically important and challenging paradigm…