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Songs of many songbird species consist of variable sequences of a finite number of syllables. A common approach for characterizing the syntax of these complex syllable sequences is to use transition probabilities between the syllables. This…

Neurons and Cognition · Quantitative Biology 2013-08-22 Dezhe Z. Jin , Alexay A. Kozhevnikov

Researches on sequential vocalization often require analysis of vocalizations in long continuous sounds. In such studies as developmental ones or studies across generations in which days or months of vocalizations must be analyzed, methods…

Neurons and Cognition · Quantitative Biology 2016-09-28 Takuya Koumura , Kazuo Okanoya

The long-range dependencies among the tokens, which originate from hierarchical structures, are a defining hallmark of human language. However, whether similar dependencies exist within the sequential vocalization of non-human animals…

Computation and Language · Computer Science 2025-02-04 Kosei Kobayashi , Kosuke Matsuzaki , Masaya Taniguchi , Keisuke Sakaguchi , Kentaro Inui , Kentaro Abe

Identifying sequences of syllables within birdsongs is key to tackling a wide array of challenges, including bird individual identification and better understanding of animal communication and sensory-motor learning. Recently, machine…

Sound · Computer Science 2025-09-27 Mélisande Teng , Julien Boussard , David Rolnick , Hugo Larochelle

Research in bioacoustics, neuroscience, and linguistics often uses birdsong as a proxy to acquire knowledge across diverse areas. This requires audio models to annotate and parse the birdsong. Developing such models requires precise,…

Machine Learning · Computer Science 2026-05-20 Houtan Ghaffari , Lukas Rauch , Paul Devos

Behavioral sequences of animals are often structured and can be described by probabilistic rules (or "action syntax"). The patterns of vocal elements in birdsong are a prime example. The encoding of such rules in neural circuits is poorly…

Neurons and Cognition · Quantitative Biology 2015-01-27 Yisi Zhang , Jason D. Wittenbach , Dezhe Z. Jin , Alexay Kozhevnikov

Consecutive repetition of actions is common in behavioral sequences. Although integration of sensory feedback with internal motor programs is important for sequence generation, if and how feedback contributes to repetitive actions is poorly…

Neurons and Cognition · Quantitative Biology 2017-04-12 Jason Wittenbach , Kristofer E. Bouchard , Michael S. Brainard , Dezhe Z. Jin

Birdsong often contains large amounts of rapid frequency modulation (FM). It is believed that the use or otherwise of FM is adaptive to the acoustic environment, and also that there are specific social uses of FM such as trills in…

Sound · Computer Science 2015-09-22 Dan Stowell , Mark D. Plumbley

Segregating an audio mixture containing multiple simultaneous bird sounds is a challenging task. However, birdsong often contains rapid pitch modulations, and these modulations carry information which may be of use in automatic recognition.…

Sound · Computer Science 2014-07-14 Dan Stowell , Sašo Muševič , Jordi Bonada , Mark D. Plumbley

The problem of deciphering how low-level patterns (action potentials in the brain, amino acids in a protein, etc.) drive high-level biological features (sensorimotor behavior, enzymatic function) represents the central challenge of…

Quantitative Methods · Quantitative Biology 2019-11-21 Damián G. Hernández , Samuel J. Sober , Ilya Nemenman

We approach the singing phrase audio to score matching problem by using phonetic and duration information - with a focus on studying the jingju a cappella singing case. We argue that, due to the existence of a basic melodic contour for each…

Sound · Computer Science 2017-07-13 Rong Gong , Jordi Pons , Xavier Serra

Traditional theories of sensorimotor learning posit that animals use sensory error signals to find the optimal motor command in the face of Gaussian sensory and motor noise. However, most such theories cannot explain common behavioral…

Neurons and Cognition · Quantitative Biology 2022-06-08 Baohua Zhou , David Hofmann , Itai Pinkoviezky , Samuel J. Sober , Ilya Nemenman

Evolution has shaped animal bodies, yet to what extent biomechanical systems impose constraints and provide opportunities across different behaviors remains unclear. In birds, quiet breathing operates at a resonance of the respiratory…

Biological Physics · Physics 2025-12-30 Facundo Fainstein , Franz Goller , Gabriel B. Mindlin

Practice of a complex motor gesture involves exploration of motor space to attain a better match to target output, but little is known about the neural code for such exploration. Here, we examine spiking in an area of the songbird brain…

Neurons and Cognition · Quantitative Biology 2014-04-03 Stephanie E. Palmer , Mimi H. Kao , Brian D. Wright , Allison J. Doupe

Bird sound data collected with unattended microphones for automatic surveys, or mobile devices for citizen science, typically contain multiple simultaneously vocalizing birds of different species. However, few works have considered the…

Machine Learning · Computer Science 2013-05-30 Forrest Briggs , Xiaoli Z. Fern , Jed Irvine

Generative statistical models of chord sequences play crucial roles in music processing. To capture syntactic similarities among certain chords (e.g. in C major key, between G and G7 and between F and Dm), we study hidden Markov models and…

Artificial Intelligence · Computer Science 2018-03-05 Hiroaki Tsushima , Eita Nakamura , Katsutoshi Itoyama , Kazuyoshi Yoshii

This paper presents a novel, syllable-structured Chinese lyrics generation model given a piece of original melody. Most previously reported lyrics generation models fail to include the relationship between lyrics and melody. In this work,…

Computation and Language · Computer Science 2019-06-25 Xu Lu , Jie Wang , Bojin Zhuang , Shaojun Wang , Jing Xiao

In many species of songbirds, juvenile males learn their songs from adult male tutors. In this paper we formulate a novel Markov model for birdsong transmission developed by analogy with models used in biological sequence analysis. We fit…

Quantitative Methods · Quantitative Biology 2025-08-29 Anthony Kwong , Mark Muldoon

Hidden Markov Models (HMMs) are powerful tools for modeling sequential data, where the underlying states evolve in a stochastic manner and are only indirectly observable. Traditional HMM approaches are well-established for linear sequences,…

Machine Learning · Statistics 2024-06-05 Farzan Vafa , Sahand Hormoz

The songs and calls of many bird species, like human speech, form distinct regional dialects. We suggest that the process of dialect formation is analogous to the physical process of magnetic domain formation. We take the coastal breeding…

Populations and Evolution · Quantitative Biology 2016-06-15 James Burridge , Steven Kenney
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