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We report the structure of transient fluctuations in the liquid phase of a two-dimensional system that exhibits several ordered phases with different symmetries. The density-temperature phase diagram of the system studied, composed of…

Soft Condensed Matter · Physics 2018-07-04 Ari B. Roitman , Linsey M. Nowack , Chris Liepold , Binhua Lin , Stuart A. Rice

We consider the roughening of small angle grain boundaries consisting of arrays of dislocations and found two transitions, corresponding to fluctuations of the dislocations along and perpendicular to the boundaries. The latter contributes…

Other Condensed Matter · Physics 2015-05-13 S. T. Chui

We simulate the compression of a two-component Lennard-Jones liquid at a variety of constant temperatures using a molecular dynamics algorithm in an isobaric-isothermal ensemble. The viscosity of the liquid increases with pressure,…

chem-ph · Physics 2009-10-22 Shelly L. Shumway , Andrew S. Clarke , Hannes Jónsson

We report the lattice dynamics of transition metal thin films by using the ultrafast electron diffraction. We observe a suppression of the diffraction intensity in a few picosecond after the photoexcitation, which is directly interpreted as…

Materials Science · Physics 2016-01-19 A. Nakamura , T. Shimojima , M. Nakano , Y. Iwasa , K. Ishizaka

A correlation is established between the macro-scale friction regimes of metals and a transition between two dominant atomistic mechanisms of deformation. Metals tend to exhibit bi-stable friction behavior -- low and converging or high and…

Materials Science · Physics 2018-05-23 Nicolas Argibay , Michael E. Chandross , Shengfeng Cheng , Joseph R. Michael

In this experiment a steady state current is maintained through a liquid crystal thin film. When the applied voltage is increased through a threshold, a phase transition is observed into a convective state characterized by the chaotic…

Chaotic Dynamics · Physics 2009-11-07 Walter I. Goldburg , Yadin Y. Goldschmidt , Hamid Kellay

The rigidity and flexibility of homologous psychrophilic(P), mesophilic(M) and thermophilic(T) proteins have been investigated at the global and local levels in terms of packing factor and atomic fluctuations obtained from B-factors. For…

Biological Physics · Physics 2021-06-08 Srikanta Sen , Munna Sarkar

In this article we study the trapped motion of a molecule undergoing diffusivity fluctuations inside a harmonic potential. For the same diffusing-diffusivity process, we investigate two possible interpretations. Depending on whether…

Statistical Mechanics · Physics 2023-01-04 Yann Lanoiselée , Aleksander Stanislavsky , Davide Calebiro , Aleksander Weron

Biomembranes wrapping cells and organelles are not only the partitions that separate the insides but also dynamic fields for biological functions accompanied by membrane shape changes. In this review, we discuss the spatiotemporal patterns…

Soft Condensed Matter · Physics 2025-01-22 Hiroshi Noguchi

Fluctuating pairwise interactions are understood to drive fluid-like states in dense biological systems. These states find a broad range of functionalities, such as directing growth during morphogenesis and forming aggregates with…

Statistical Mechanics · Physics 2025-09-10 Emir Sezik , Henry Alston , Thibault Bertrand

We investigate the role of large amplitude sub-critical thermal fluctuations in the dynamics of first order phase transitions. In particular, we obtain a kinetic equation for the number density of sub-critical fluctuations of the…

High Energy Physics - Phenomenology · Physics 2009-10-22 Graciela Gelmini , Marcelo Gleiser

We investigate the superfluid dynamics of a Josephson junction beyond the mean-field description, incorporating the role of thermal fluctuations as well as quantum fluctuations. Using a formalism that accounts for the fluctuations in a…

Quantum Gases · Physics 2026-05-01 Andrea Bardin , Francesco Lorenzi , Luca Salasnich

The free energy of inserting a protein into a membrane is determined by considering the variation in the spectrum of thermal fluctuations in response to the presence of a rigid inclusion. Both numerically and through a simple analytical…

Soft Condensed Matter · Physics 2007-05-23 Christian D. Santangelo , Oded Farago

Surprisingly little is known about the microscopic processes that govern ferroelectric switching in orthorhombic ferroelectrics. To study microscopic switching processes we combine ab initio-based molecular dynamics simulations and data…

Electron transport through amorphous monatomic metallic structures generated earlier by molecular dynamics simulations is studied numerically. The interference of electronic trajectories backscattered by the structural disorder probes the…

Disordered Systems and Neural Networks · Physics 2009-10-31 V. I. Kozub , C. Oligschleger

In this letter we analyze the effects of an externally applied electric field on thermal fluctuations for a fluid containing charged species. We show in particular that the fluctuating Poisson-Nernst-Planck equations for charged…

We study the temperature dependence of the conductivity of the 2D electronic solid. In realistic samples, a domain structure forms in the solid and each domain randomly orients in the absence of the in-plane field. At higher temperature,…

Mesoscale and Nanoscale Physics · Physics 2009-11-10 Shi-Jie Yang , Yue Yu

Proteins can be regarded as thermal nanosensors in an intra-body network. Upon being stimulated by Terahertz (THz) frequencies that match their vibrational modes, protein molecules experience resonant absorption and dissipate their energy…

Molecular Networks · Quantitative Biology 2024-07-01 Hadeel Elayan , Samar Elmaadawy , Andrew W. Eckford , Raviraj Adve , Josep Jornet

We study mesoscopic fluctuations of the conductance through a quantum dot at the wings of the Coulomb blokade peaks. At low temperatures, the main mechanism of conduction is the elastic cotunneling. The conductance strongly fluctuates with…

Condensed Matter · Physics 2009-10-28 I. L. Aleiner , L. I. Glazman

We study cold denaturation of proteins at high pressures. Using multicanonical Monte Carlo simulations of a model protein in a water bath, we investigate the effect of water density fluctuations on protein stability. We find that above the…

Soft Condensed Matter · Physics 2009-11-07 Manuel I. Marques , Jose M. Borreguero , H. Eugene Stanley , Nikolay V. Dokholyan