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Fundamental biological processes such as transcription and translation, where a genetic sequence is sequentially read by a macromolecule, have been well described by a classical model of non-equilibrium statistical physics, the totally…

Quantitative Methods · Quantitative Biology 2019-08-15 Jingkui Wang , Benjamin Pfeuty , Quentin Thommen , Carmen Romano , Marc Lefranc

We study the totally asymmetric simple exclusion process (TASEP) on trees where particles are generated at the root. Particles can only jump away from the root, and they jump from $x$ to $y$ at rate $r_{x,y}$ provided $y$ is empty. Starting…

Probability · Mathematics 2024-10-01 Nina Gantert , Nicos Georgiou , Dominik Schmid

We consider the totally asymmetric simple exclusion process (TASEP) on a periodic one-dimensional lattice of L sites. Using Bethe ansatz, we derive parametric formulas for the eigenvalues of its generator in the thermodynamic limit. This…

Statistical Mechanics · Physics 2013-10-02 Sylvain Prolhac

We consider a family of totally asymmetric simple exclusion processes (TASEPs), consisting of particles on a lattice that require binding by a "token" in various physical configurations to advance over the lattice. Using a combination of…

Statistical Mechanics · Physics 2025-02-11 Bor Kavčič , Gašper Tkačik

We demonstrate the power of 2D tensor networks for obtaining large deviation functions of dynamical observables in a classical nonequilibrium setting. Using these methods, we analyze the previously unstudied dynamical phase behavior of the…

Statistical Mechanics · Physics 2020-10-07 Phillip Helms , Garnet Kin-Lic Chan

We report here our preliminary results in the study of a new version of the generalized Totally Asymmetric Simple Exclusion process (gTASEP) on open tracks. In the gTASEP an additional interaction between the particles is considered,…

Statistical Mechanics · Physics 2022-12-06 A. M. Povolotsky , N. C. Pesheva , N. Zh. Bunzarova

We consider the totally asymmetric simple exclusion process (TASEP) on a finite lattice with open boundaries. We show, using the recursive structure of the Markov matrix that encodes the dynamics, that there exist two transfer matrices…

Statistical Mechanics · Physics 2015-05-14 Marko Woelki , Kirone Mallick

We investigate the asymmetric simple exclusion process (ASEP) on an interval with open boundaries. We provide a representation for its stationary distribution as a marginal of the top layer of a two-layer ensemble under Liggett's condition.…

Probability · Mathematics 2025-02-10 Wlodek Bryc

Motivated by the recent experimental observations on clustering of motor proteins on microtubule filament, we study an open system of two parallel totally asymmetric simple exclusion processes under asymmetric coupling conditions, which…

Statistical Mechanics · Physics 2016-03-23 Arvind Kumar Gupta

Research in combinatorics has often explored the asymmetric simple exclusion process (ASEP). The ASEP, inspired by examples from statistical mechanics, involves particles of various species moving around a lattice. With the traditional ASEP…

Combinatorics · Mathematics 2024-11-21 David W. Ash

We consider the dynamics of cargo driven by a collection of interacting molecular motors in the context of an asymmetric simple exclusion processes (ASEP). The model is formulated to account for i) excluded volume interactions, ii) the…

Subcellular Processes · Quantitative Biology 2015-05-13 Carla Goldman , Elisa T. Sena

We prove an exact solution of a multi-lane totally asymmetric simple exclusion process (TASEP) with heterogeneous lane-changing rates on a torus. The solution is given by a factorized form; that is, the TASEP in each lane and lane-changing…

Physics and Society · Physics 2015-06-23 Takahiro Ezaki , Katsuhiro Nishinari

We study the steady state of the two-species Asymmetric Simple Exclusion Process (ASEP) with open boundary conditions. The matrix product method works for the determination of the stationary probability distribution. Several physical…

Statistical Mechanics · Physics 2007-05-23 Masaru Uchiyama

We define and study one-dimensional model of irreversible aggregation of particles obeying a discrete-time kinetics which is a special limit of the generalized Totally Asymmetric Simple Exclusion Process (gTASEP) on open chains. The model…

Statistical Mechanics · Physics 2017-05-10 Nadezhda Zh. Bunzarova , Nina Ch. Pesheva

To mimic the complex transport-like collective phenomena in a man-made or natural system, we study an open network junction model of totally asymmetric simple exclusion process with bulk particle attachment and detachment. The stationary…

Statistical Mechanics · Physics 2022-02-23 Ankita Gupta , Arvind Kumar Gupta

Totally asymmetric simple exclusion processes on lattices with junctions, where particles interact with hard-core exclusion and move on parallel lattice branches that at the junction combine into a single lattice segment, are investigated.…

Statistical Mechanics · Physics 2009-11-11 Ekaterina Pronina , Anatoly B. Kolomeisky

We introduce a multi-species generalization of the asymmetric simple exclusion process (ASEP) with a ``no-passing" constraint, forbidding overtaking, on a one-dimensional open chain. This no-passing rule fragments the Hilbert space into an…

Statistical Mechanics · Physics 2025-04-25 Urei Miura

Motivated by interest in pedestrian traffic we study two lanes (one-dimensional lattices) of length $L$ that intersect at a single site. Each lane is modeled by a TASEP (Totally Asymmetric Exclusion Process). The particles enter and leave…

Statistical Mechanics · Physics 2017-09-20 C. Appert-Rolland , J. Cividini , H. J. Hilhorst

Using the generalized normally ordered form of words in a locally-free group of $n$ generators, we show that in the limit $n\to\infty$, the partition function of weighted directed lattice animals on a semi-infinite strip coincides with the…

Statistical Mechanics · Physics 2015-06-11 Nils Haug , Sergei Nechaev , Mikhail Tamm

Non-trivial linear bounds are obtained for the displacement of a random walk in a dynamic random environment given by a one-dimensional simple symmetric exclusion process in equilibrium. The proof uses an adaptation of multiscale…

Probability · Mathematics 2013-08-14 Renato Soares dos Santos