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We study the self-assembly behaviour of patchy particles with `protein-like' interactions that can be considered as a minimal model for the assembly of viral capsids and other shell-like protein complexes. We thoroughly explore the…

Soft Condensed Matter · Physics 2010-01-21 Alex W. Wilber , Jonathan P. K. Doye , Ard A. Louis , Anna C. F. Lewis

We present a quantitative comparison between extensive Monte Carlo simulations and self-consistent field calculations on the phase diagram and wetting behavior of a symmetric, binary (AB) polymer blend confined into a film. The flat walls…

Statistical Mechanics · Physics 2009-10-31 M. Mueller , K. Binder

Accurate, yet computationally efficient energy functions are essential for state-of-the art molecular dynamics (MD) studies of condensed phase systems. Here, a generic workflow based on a combination of machine learning-based and empirical…

Chemical Physics · Physics 2025-07-01 Eric D. Boittier , Silvan Käser , Markus Meuwly

In Part II of this study we consider two cases of three-phase coexistence. First, the capped capillary may allow for vapour, drop-like, and slab-like phases to coexist at the same values of temperature and chemical potential. Second, the…

Soft Condensed Matter · Physics 2013-09-23 P. Yatsyshin , N. Savva , S. Kalliadasis

We develop a multi order parameter mean-field formalism for systems of coupled quantum rotors. The scheme is developed to account for systems where {\it ortho-para} distinction is valid. We apply our formalism to solid H$_2$ and D$_2$. We…

Statistical Mechanics · Physics 2008-04-23 Balazs Hetenyi , Sandro Scandolo , Erio Tosatti

We study the spatio-temporal dynamics of a model of polar active fluid in two dimensions. The system exhibits a transition from an isotropic to a polarized state as a function of density. The uniform polarized state is, however, unstable…

Soft Condensed Matter · Physics 2011-12-08 Luca Giomi , M. Cristina Marchetti

A $2D$ model describing depinning of an interface from a rough, self-affine substrate, is studied by transfer matrix methods. The phase diagram is determined for several values of the roughness exponent, $\zeta_S$, of the attractive wall.…

Statistical Mechanics · Physics 2015-06-25 G. Giugliarelli , A. L. Stella

A simple model of dimerizing hard spheres with highly nontrivial fluid-solid phase behaviour is proposed. The model is studied using the recently proposed resummed thermodynamic perturbation theory for central force (RTPT-CF) associating…

Soft Condensed Matter · Physics 2016-07-26 Yurij V. Kalyuzhnyi , Peter T. Cummings

We use liquid state theory and computer simulations to gain insights into the shape of the structure factor for fluids of particles interacting via a combination of short-range attractions and long-range repulsions. Such systems can…

Soft Condensed Matter · Physics 2016-08-25 Jonathan A. Bollinger , Thomas M. Truskett

We study the phase behavior of a symmetric binary polymer blend which is confined into a thin film. The film surfaces interact with the monomers via short range potentials. We calculate the phase behavior within the self-consistent field…

Statistical Mechanics · Physics 2009-10-31 M. Mueller , E. V. Albano , K. Binder

We study the phase space structures that control the transport in a classical Hamiltonian model for a chemical reaction. This model has been proposed to study the yield of products in an ultracold exothermic reaction. In the considered…

Chaotic Dynamics · Physics 2021-01-04 Francisco Gonzalez Montoya , Stephen Wiggins

We investigate the impact of random pinned disorder on a collection of self propelled particles. To achieve this, we construct a continuum model by formulating the coupled hydrodynamic equations for slow variables, local density and…

Soft Condensed Matter · Physics 2025-12-24 Pratikshya Jena , Shambhavi Dikshit , Shradha Mishra

We used the Density Functional formalism, in particular the Scaled Particle Theory, applied to a length-polydisperse hard-rectangular fluid to study its phase behavior as a function of the mean particle aspect ratio ($\kappa_0$) and…

Soft Condensed Matter · Physics 2017-05-23 Ariel Diaz-De Armas , Yuri Martinez-Raton

Traditional plastics demand a choice between durability (thermosets) and reprocessability (thermoplastics). Vitrimers are a recent class of polymer network combining both these qualities. Their increased cost of production can be offset by…

Soft Condensed Matter · Physics 2026-03-27 A. A. Rispo Constantinou , B. Magyari , G. Ianniruberto , E. van Ruymbeke , D. J. Read

We study the vapour-liquid phase behaviour of an ionic fluid confined in a random porous matrix formed by uncharged hard sphere particles. The ionic fluid is modelled as an equimolar binary mixture of oppositely charged equisized hard…

Soft Condensed Matter · Physics 2016-09-21 M. F. Holovko , O. Patsahan , T. Patsahan

We consider classical hard-core particles moving on two parallel chains in the same direction. An interaction between the channels is included via the hopping rates. For a ring, the stationary state has a product form. For the case of…

Statistical Mechanics · Physics 2011-07-13 Vladislav Popkov , Ingo Peschel

In complex ecological communities, species may self-organize into clusters or clumps where highly similar species can coexist. The emergence of such species clusters can be captured by the interplay between neutral and niche theories. Based…

Statistical Mechanics · Physics 2026-04-16 Shing Yan Li , Mehran Kardar , Zhijie Feng , Washington Taylor

The past few years have seen many advances in our understanding of the dynamics of polymeric fluids. These include improvements on the successful reptation theory; an emerging molecular theory of semiflexible chain dynamics; and an…

Soft Condensed Matter · Physics 2007-05-23 Peter D. Olmsted

We study a system of self-propelled disks that perform run-and-tumble motion, where particles can adopt more than one internal state. One of those internal states can be transmitted to another particle if the particle carrying this state…

Biological Physics · Physics 2019-12-30 Fernando Peruani , Gustavo Sibona

Recent developments in the synthesis of colloidal particles allow for control over shape and inter-particle interaction. One example, among others, is the so-called "Mickey Mouse" (MM) particle for which the self-assembly properties have…

Soft Condensed Matter · Physics 2015-09-16 Guido Avvisati , Marjolein Dijkstra