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The human brain consists of a large number of interconnected neurons communicating via exchange of electrical spikes. Simulations play an important role in better understanding electrical activity in the brain and offers a way to to compare…

Quantitative Methods · Quantitative Biology 2018-11-07 Felix Huber

LU factorization for sparse matrices is the most important computing step for many engineering and scientific computing problems such as circuit simulation. But parallelizing LU factorization with the Graphic Processing Units (GPU) still…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-14 Shaoyi Peng , Sheldon X. -D. Tan

Many problems in scientific and engineering applications contain sparse matrices or graphs as main input objects, e.g. numerical simulations on meshes. Large inputs are abundant these days and require parallel processing for memory size and…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-23 Charilaos Tzovas , Maria Predari , Henning Meyerhenke

We present a batched first-order method for solving multiple linear programs in parallel on GPUs. Our approach extends the primal-dual hybrid gradient algorithm to efficiently solve batches of related linear programming problems that arise…

Optimization and Control · Mathematics 2026-01-30 Nicolas Blin , Stefano Gualandi , Christopher Maes , Andrea Lodi , Bartolomeo Stellato

Support for lower precision computation is becoming more common in accelerator hardware due to lower power usage, reduced data movement and increased computational performance. However, computational science and engineering (CSE) problems…

Numerical Analysis · Mathematics 2021-05-18 Jennifer A. Loe , Christian A. Glusa , Ichitaro Yamazaki , Erik G. Boman , Sivasankaran Rajamanickam

This paper introduces an efficient and generic framework for finite-element simulations under an implicit time integration scheme. Being compatible with generic constitutive models, a fast matrix assembly method exploits the fact that…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-12 Ziqiu Zeng , Hadrien Courtecuisse

Sparse matrix-vector and matrix-matrix multiplication (SpMV and SpMM) are fundamental in both conventional (graph analytics, scientific computing) and emerging (sparse DNN, GNN) domains. Workload-balancing and parallel-reduction are…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-15 Guyue Huang , Guohao Dai , Yu Wang , Yufei Ding , Yuan Xie

Selected inversion is essential for applications such as Bayesian inference, electronic structure calculations, and inverse covariance estimation, where computing only specific elements of large sparse matrix inverses significantly reduces…

Performance · Computer Science 2025-09-03 Esmail Abdul Fattah , Hatem Ltaief , Havard Rue , David Keyes

A finite-difference Micromagnetic solver is presented utilizing the C++ Accelerated Massive Parallelism (C++ AMP). The high speed performance of a single Graphics Processing Unit (GPU) is demonstrated compared to a typical CPU-based solver.…

Computational Engineering, Finance, and Science · Computer Science 2014-07-07 Ru Zhu

Parallel algorithms on CPU and GPU are implemented for the Unified Gas-Kinetic Scheme and their performances are investigated and compared by a two dimensional channel flow case. The parallel CPU algorithm has a one dimensional block…

Computational Physics · Physics 2018-11-02 Jizhou Liu , Fang Q. Hu , Xiaodong Li

We present a case-study on the utility of graphics cards to perform massively parallel simulation of advanced Monte Carlo methods. Graphics cards, containing multiple Graphics Processing Units (GPUs), are self-contained parallel…

Computation · Statistics 2015-05-05 Anthony Lee , Christopher Yau , Michael B. Giles , Arnaud Doucet , Christopher C. Holmes

We present a parallel hierarchical solver for general sparse linear systems on distributed-memory machines. For large-scale problems, this fully algebraic algorithm is faster and more memory-efficient than sparse direct solvers because it…

Numerical Analysis · Mathematics 2017-12-21 Chao Chen , Hadi Pouransari , Sivasankaran Rajamanickam , Erik G. Boman , Eric Darve

Simulations of physical phenomena are essential to the expedient design of precision components in aerospace and other high-tech industries. These phenomena are often described by mathematical models involving partial differential equations…

Computational Physics · Physics 2017-01-05 Daniel Magee , Kyle E Niemeyer

Sparse matrix multiplication is an important kernel for large-scale graph processing and other data-intensive applications. In this paper, we implement various asynchronous, RDMA-based sparse times dense (SpMM) and sparse times sparse…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-06 Benjamin Brock , Aydın Buluç , Katherine Yelick

The Kernel Polynomial Method (KPM) is one of the fast diagonalization methods used for simulations of quantum systems in research fields of condensed matter physics and chemistry. The algorithm has a difficulty to be parallelized on a…

Computational Physics · Physics 2011-05-30 Shixun Zhang , Shinichi Yamagiwa , Masahiko Okumura , Seiji Yunoki

The conjugate gradient solver (CG) is a prevalent method for solving symmetric and positive definite linear systems Ax=b, where effective preconditioners are crucial for fast convergence. Traditional preconditioners rely on prescribed…

Machine Learning · Computer Science 2025-11-03 Zherui Yang , Zhehao Li , Kangbo Lyu , Yixuan Li , Tao Du , Ligang Liu

In this paper, we present a GPU-accelerated direct-sum boundary integral method to solve the linear Poisson-Boltzmann (PB) equation. In our method, a well-posed boundary integral formulation is used to ensure the fast convergence of Krylov…

Numerical Analysis · Mathematics 2015-06-12 Weihua Geng , Ferosh Jacob

Fueled by the ability to mine real-world graph data, GNN applications have experienced phenomenal growth. Sparse Matrix-Matrix Multiplication (SpMM) is a critical operator in GNNs. However, existing SpMM designs for GNNs struggle to adapt…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-18 Lixing Zhang , Guanhua Ye , Hongzheng Li , Shigang Li , Yingxia Shao

We present a novel parallel algorithm for cloth simulation that exploits multiple GPUs for fast computation and the handling of very high resolution meshes. To accelerate implicit integration, we describe new parallel algorithms for sparse…

Graphics · Computer Science 2020-08-05 Cheng Li , Min Tang , Ruofeng Tong , Ming Cai , Jieyi Zhao , Dinesh Manocha

This paper presents a Graphics Processing Units (GPUs) acceleration method of an iterative scheme for gas-kinetic model equations. Unlike the previous GPU parallelization of explicit kinetic schemes, this work features a fast converging…

Computational Physics · Physics 2020-01-08 Lianhua Zhu , Peng Wang , Songze Chen , Zhaoli Guo , Yonghao Zhang