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We study a minimal extension of the worm-like chain to describe polypeptides having alpha-helical secondary structure. In this model presence/absence of secondary structure enters as a scalar variable that controls the local chain bending…

Statistical Mechanics · Physics 2009-11-10 Buddhapriya Chakrabarti , Alex J. Levine

A system consisting of the cubic complex Ginzburg-Landau equation which is linearly coupled to an additional linear dissipative equation, is considered. The model was introduced earlier in the context of dual-core nonlinear optical fibers…

Pattern Formation and Solitons · Physics 2009-10-31 Hidetsugu Sakaguchi , Boris A. Malomed

In the aerospace industry the trend for light-weight structures and the resulting complex dynamic behaviours currently challenge vibration engineers. In many cases, these light-weight structures deviate from linear behaviour, and complex…

Pattern Formation and Solitons · Physics 2018-03-14 F. Fontanela , A. Grolet , L. Salles , A. Chabchoub , N. Hoffmann

Force-induced reversible transformations between coiled and normal polymorphs of bacterial flagella have been observed in recent optical-tweezer experiment. We introduce a discrete elastic rod model with two competing helical states…

Soft Condensed Matter · Physics 2008-04-08 Hirofumi Wada , Roland R. Netz

The effects of a (non co-crystallizing) nucleating agent on secondary nucleation rate and final lamellar thickness in isothermally melt-crystallizing polyethylene oxide are considered. SAXS reveals that lamellae formed in nucleated samples…

Soft Condensed Matter · Physics 2009-11-07 F. Aliotta , G. Di Marco , R. Ober , M. Pieruccini

We investigate the properties of discrete breathers in a Bose-Einstein condensate with two- and three-body interactions in optical lattice. In the tight-binding approximation the Gross-Pitaevskii equation with periodic potential for the…

Other Condensed Matter · Physics 2007-05-23 F. Kh. Abdullaev , A. Bouketir , A. Messikh , B. A. Umarov

We explore the dynamics of strongly localized periodic solutions (discrete solitons, or discrete breathers) in a finite one-dimensional chain of asymmetric vibro-impact oscillators. The model involves a parabolic on-site potential with…

Pattern Formation and Solitons · Physics 2017-01-12 I. Grinberg , O. V. Gendelman

Vortices are localized planar structures that attain topological stability and can be used to describe collective behavior in a diversity of situations of current interest in nonlinear science. In high energy physics, vortices engender…

High Energy Physics - Theory · Physics 2019-10-30 D. Bazeia , M. A. Liao , M. A. Marques , R. Menezes

We report on the existence of discrete breathers in a one-dimensional, mass-in-mass chain with linear intersite coupling and nonlinear Hertzian local resonators, which is motivated by recent studies of the dynamics of microspheres adhered…

Pattern Formation and Solitons · Physics 2017-03-01 S. P. Wallen , J. Lee , D. Mei , C. Chong , P. G. Kevrekidis , N. Boechler

For several atomistic models of glass formers, at conditions below their glassy dynamics onset temperatures, ${T_\mathrm{o}}$, we use importance sampling of trajectory space to study the structure, statistics and dynamics of excitations…

Statistical Mechanics · Physics 2014-05-08 Aaron S. Keys , Lester O. Hedges , Juan P. Garrahan , Sharon C. Glotzer , David Chandler

Photomechanical liquid crystal elastomers (LCEs) are responsive polymers that can convert light directly into mechanical deformation. This unique feature makes these materials an attractive candidate for soft actuators capable of remote and…

Soft Condensed Matter · Physics 2022-11-23 Ameneh Maghsoodi , Kaushik Bhattacharya

In this work, we study a space-time modulated electro-mechanical system, consisting of an array of coupled cantilevers with their on-site potential provided by electromagnets driven by AC currents. Model equations are derived, and the…

Pattern Formation and Solitons · Physics 2026-04-01 Masayuki Kimura , Juan F. R. Archilla , Yusuke Doi , Víctor J. Sánchez-Morcillo

We study the effects of electron-lattice interaction in the presence of discrete breathers. The lattice is treated classically. We consider two different situations - i) the scattering of an electron by a discrete breather in the…

Statistical Mechanics · Physics 2008-02-03 S. Flach , K. Kladko

Helices are not generic outcomes of polymer collapse. Collapsed conformations of semiflexible polymers with isotropic attractions typically form globules, toroids, or rod-like structures, as seen in simulations and described by…

Statistical Mechanics · Physics 2026-03-31 Biman Bagchi

In different nonlinear mediums, the wave trains carry energy and expose many amazing features. To describe a nonlinear phenomenon, a soliton is one that preserves its shape and amplitude even after the collision. Breather is one kind of…

Recent simulation and model system studies suggest that local structural excitations play an important role in the dynamics of liquids and glasses. Here, for the first time, we quantify excitation populations in real liquids, showing that…

Soft Condensed Matter · Physics 2023-03-20 Marcus T. Cicerone , Kelly Badilla-Nunez , Jessica Zahn , John P. Stoppelman , Jesse G. McDaniel

We design models for helium in matrices like aerogel, Vycor or Geltech from a manifestly microscopic point of view. For that purpose, we calculate the dynamic structure function of 4He on Si substrates and between two Si walls as a function…

Condensed Matter · Physics 2009-11-10 V. Apaja , E. Krotscheck

A comprehensive analytical theory for nonlinear excitations related to horizontal (longitudinal, acoustic mode) as well as vertical (transverse, optical mode) motion of charged dust grains in a dust crystal is presented. Different types of…

Plasma Physics · Physics 2007-05-23 Ioannis Kourakis , Padma Kant Shukla , Bengt Eliasson

We consider the mobility of electrons in an environment of static hard-sphere scatterers, which provides a realistic description of electrons in Helium gas. A systematic expansion in the scatterer density is carried to second order relative…

Condensed Matter · Physics 2009-10-22 K. I. Wysokinski , W. Park , D. Belitz , T. R. Kirkpatrick

This work addresses the question of whether low-lying excitations in conjugated polymers are comprised of free charge-carriers or excitons. States are characterised as bound or unbound according to the scaling of the average particle-hole…

Condensed Matter · Physics 2009-10-31 M. Boman , R. J. Bursill
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