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This paper addresses the following verification task: Given a graph transformation system and a class of initial graphs, can we guarantee (non-)reachability of a given other class of graphs that characterizes bad or erroneous states? Both…

Logic in Computer Science · Computer Science 2025-04-14 Barbara König , Arend Rensink , Lara Stoltenow , Fabian Urrigshardt

A common technique for checking properties of complex state machines is to build a finite abstraction then check the property on the abstract system -- where a passing check on the abstract system is only transferred to the original system…

Logic in Computer Science · Computer Science 2020-09-30 Rob Sumners

The explosion of data available in life sciences is fueling an increasing demand for expressive models and computational methods. Graph transformation is a model for dynamic systems with a large variety of applications. We introduce a novel…

We introduce techniques for proving uniform termination of graph transformation systems, based on matrix interpretations for string rewriting. We generalize this technique by adapting it to graph rewriting instead of string rewriting and by…

Logic in Computer Science · Computer Science 2023-10-12 H. J. Sander Bruggink , Barbara König , Dennis Nolte , Hans Zantema

A graph theoretic perspective is taken for a range of phenomena in continuum physics in order to develop representations for analysis of large scale, high-fidelity solutions to these problems. Of interest are phenomena described by partial…

Computational Physics · Physics 2019-05-22 R. Banerjee , K. Sagiyama , G. H. Teichert , K. Garikipati

Many graph algorithms can be viewed as sets of rules that are iteratively applied, with the number of iterations dependent on the size and complexity of the input graph. Existing machine learning architectures often struggle to represent…

Artificial Intelligence · Computer Science 2024-08-21 Florian Grötschla , Joël Mathys , Christoffer Raun , Roger Wattenhofer

This paper introduces and demonstrates a computational pipeline for the statistical analysis of shape graph datasets, namely geometric networks embedded in 2D or 3D spaces. Unlike traditional abstract graphs, our purpose is not only to…

Machine Learning · Computer Science 2026-02-19 Murad Hossen , Demetrio Labate , Nicolas Charon

Recently, Transformer model, which has achieved great success in many artificial intelligence fields, has demonstrated its great potential in modeling graph-structured data. Till now, a great variety of Transformers has been proposed to…

Machine Learning · Computer Science 2022-02-18 Erxue Min , Runfa Chen , Yatao Bian , Tingyang Xu , Kangfei Zhao , Wenbing Huang , Peilin Zhao , Junzhou Huang , Sophia Ananiadou , Yu Rong

Recently, many systems for graph analysis have been developed to address the growing needs of both industry and academia to study complex graphs. Insight into the practical uses of graph analysis will allow future developments of such…

Social and Information Networks · Computer Science 2018-07-03 Tim Hegeman , Alexandru Iosup

Model transformation tools assist system designers by reducing the labor--intensive task of creating and updating models of various aspects of systems, ensuring that modeling assumptions remain consistent across every model of a system, and…

Systems and Control · Computer Science 2019-07-02 Natasha Jarus , Sahra Sedigh Sarvestani , Ali Hurson

Graph Transformers (GTs) have demonstrated a strong capability in modeling graph structures by addressing the intrinsic limitations of graph neural networks (GNNs), such as over-smoothing and over-squashing. Recent studies have proposed…

Machine Learning · Computer Science 2025-02-28 Chaohao Yuan , Kangfei Zhao , Ercan Engin Kuruoglu , Liang Wang , Tingyang Xu , Wenbing Huang , Deli Zhao , Hong Cheng , Yu Rong

Graphs provide a powerful representation formalism that offers great promise to benefit tasks like handwritten signature verification. While most state-of-the-art approaches to signature verification rely on fixed-size representations,…

Computer Vision and Pattern Recognition · Computer Science 2019-06-26 Paul Maergner , Nicholas R. Howe , Kaspar Riesen , Rolf Ingold , Andreas Fischer

Modern software systems increasingly incorporate self-* behavior to adapt to changes in the environment at runtime. Such adaptations often involve reconfiguring the software architecture of the system. Many systems also need to manage their…

Artificial Intelligence · Computer Science 2014-07-31 Steffen Ziegert

We present abstraction techniques that transform a given non-linear dynamical system into a linear system or an algebraic system described by polynomials of bounded degree, such that, invariant properties of the resulting abstraction can be…

Symbolic Computation · Computer Science 2012-04-20 Sriram Sankaranarayanan

The vertices of a finite state system are usually a subset of the natural numbers. Most algorithms relative to these systems only use this fact to select vertices. For infinite state systems, however, the situation is different: in…

Formal Languages and Automata Theory · Computer Science 2009-11-18 Christophe Morvan

We develop a shape analysis for reasoning about relational properties of data structures. Both the concrete and the abstract domain are represented by hypergraphs. The analysis is parameterized by user-supplied indexed graph grammars to…

Programming Languages · Computer Science 2018-04-20 Hannah Arndt , Christina Jansen , Christoph Matheja , Thomas Noll

Many systems comprising entities in interactions can be represented as graphs, whose structure gives significant insights about how these systems work. Network theory has undergone further developments, in particular in relation to…

Data Analysis, Statistics and Probability · Physics 2016-06-14 Ronan Hamon , Pierre Borgnat , Patrick Flandrin , Céline Robardet

Graph-based modeling plays a fundamental role in many areas of computer science. In this paper, we introduce systems of graph formulas with variables for specifying graph properties; this notion generalizes the graph formulas introduced in…

Formal Languages and Automata Theory · Computer Science 2026-01-23 Frank Drewes , Berthold Hoffmann , Mark Minas

This paper focuses on the statistical analysis of shapes of data objects called shape graphs, a set of nodes connected by articulated curves with arbitrary shapes. A critical need here is a constrained registration of points (nodes to…

Computer Vision and Pattern Recognition · Computer Science 2023-08-15 Shenyuan Liang , Mauricio Pamplona Segundo , Sathyanarayanan N. Aakur , Sudeep Sarkar , Anuj Srivastava

Adaptive networks model social, physical, technical, or biological systems as attributed graphs evolving at the level of both their topology and data. They are naturally described by graph transformation, but the majority of authors take an…

Discrete Mathematics · Computer Science 2021-12-22 Nicolas Behr , Bello Shehu Bello , Sebastian Ehmes , Reiko Heckel
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