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With new emerging technologies, such as satellites and drones, archaeologists collect data over large areas. However, it becomes difficult to process such data in time. Archaeological data also have many different formats (images, texts,…

Databases · Computer Science 2021-07-26 Pengfei Liu , Sabine Loudcher , Jérôme Darmont , Camille Noûs

Data comes in many forms. From a shallow perspective, they can be viewed as being either in structured (e.g., as a relation, as key-value pairs) or unstructured (e.g., text, image) formats. So far, machines have been fairly good at…

Computation and Language · Computer Science 2026-03-31 Md Ataur Rahman , Dimitris Sacharidis , Oscar Romero , Sergi Nadal

Metadata, often termed "data about data," is crucial for organizing, understanding, and managing vast omics datasets. It aids in efficient data discovery, integration, and interpretation, enabling users to access, comprehend, and utilize…

Finding data is a necessary precursor to being able to reuse data, although relatively little large-scale empirical evidence exists about how researchers discover, make sense of and (re)use data for research. This study presents evidence…

Digital Libraries · Computer Science 2020-06-30 Kathleen Gregory , Paul Groth , Andrea Scharnhorst , Sally Wyatt

Biological data in digital form has become a, if not the, driving force behind innovations in biology, medicine, and the environment. No study and no model would be complete without access to digital data (including text) collected by…

Other Quantitative Biology · Quantitative Biology 2023-11-13 Terence R. Johnson , Philip E. Bourne

The increasing volumes of data produced by high-throughput instruments coupled with advanced computational infrastructures for scientific computing have enabled what is often called a {\em Fourth Paradigm} for scientific research based on…

Scientific data governance should prioritize maximizing the utility of data throughout the research lifecycle. Research software systems that enable analysis reproducibility inform data governance policies and assist administrators in…

The emergence of "big data" offers unprecedented opportunities for not only accelerating scientific advances but also enabling new modes of discovery. Scientific progress in many disciplines is increasingly enabled by our ability to examine…

Computers and Society · Computer Science 2017-07-03 Vasant G. Honavar , Mark D. Hill , Katherine Yelick

Reproducibility of research is essential for science. However, in the way modern computational biology research is done, it is easy to lose track of small, but extremely critical, details. Key details, such as the specific version of a…

A cross-disciplinary examination of the user behaviours involved in seeking and evaluating data is surprisingly absent from the research data discussion. This review explores the data retrieval literature to identify commonalities in how…

Digital Libraries · Computer Science 2020-03-13 Kathleen Gregory , Paul Groth , Helena Cousijn , Andrea Scharnhorst , Sally Wyatt

Scientists strive to make their datasets available in open repositories, with the goal that they be findable, accessible, interoperable, and reusable (FAIR). Although it is hard for most investigators to remember all the guiding principles…

Digital Libraries · Computer Science 2025-07-31 Mark A. Musen , Martin J. O'Connor , Josef Hardi , Marcos Martinez-Romero

Traditional data in Digital Humanities projects bear various formats (structured, semi-structured, textual) and need substantial transformations (encoding and tagging, stemming, lemmatization, etc.) to be managed and analyzed. To fully…

Databases · Computer Science 2020-12-07 Jérôme Darmont , Cécile Favre , Sabine Loudcher , Camille Noûs

The web of data has brought forth the need to preserve and sustain evolving information within linked datasets; however, a basic requirement of data preservation is the maintenance of the datasets' structural characteristics as well. As…

The Web community has introduced a set of standards and technologies for representing, querying, and manipulating a globally distributed data structure known as the Web of Data. The proponents of the Web of Data envision much of the world's…

Artificial Intelligence · Computer Science 2009-08-05 Marko A. Rodriguez

Many ground-breaking advancements in machine learning can be attributed to the availability of a large volume of rich data. Unfortunately, many large-scale datasets are highly sensitive, such as healthcare data, and are not widely available…

Machine Learning · Computer Science 2020-12-09 James Jordon , Alan Wilson , Mihaela van der Schaar

We describe the current state and future plans for a set of tools for scientific data management (SDM) designed to support scientific transparency and reproducible research. SDM has been in active use at our MRI Center for more than two…

Quantitative Methods · Quantitative Biology 2015-02-25 B. A. Wandell , A. Rokem , L. M. Perry , G. Schaefer , R. F. Dougherty

As the amount of scientific data continues to grow at ever faster rates, the research community is increasingly in need of flexible computational infrastructure that can support the entirety of the data science lifecycle, including…

Computers and Society · Computer Science 2016-04-12 Robert L. Grossman , Allison Heath , Mark Murphy , Maria Patterson , Walt Wells

Research is a tertiary priority in the EHR, where the priorities are patient care and billing. Because of this, the data is not standardized or formatted in a manner easily adapted to machine learning approaches. Data may be missing for a…

Machine Learning · Computer Science 2017-07-25 Brett K. Beaulieu-Jones

Modern tools for biological research, especially microscopy, have rapidly advanced in recent years, which has led to the generation of increasingly large amounts of data on a regular basis. The result is that scientists desperately need…

Other Quantitative Biology · Quantitative Biology 2021-08-18 Andrey Andreev , Tom Morrell , Kristin Briney , Sandra Gesing , Uri Manor