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An evolutionary tree is a cascade of bifurcations starting from a single common root, generating a growing set of daughter species as time goes by. Species here is a general denomination for biological species, spoken languages or any other…

Quantitative Methods · Quantitative Biology 2013-08-26 Paulo Murilo Castro de Oliveira

For the directed landscape, the putative universal space-time scaling limit object in the (1+1) dimensional Kardar-Parisi-Zhang (KPZ) universality class, consider the geodesic tree -- the tree formed by the coalescing semi-infinite…

Probability · Mathematics 2025-04-18 Riddhipratim Basu , Manan Bhatia

The Aldous diffusion is a conjectured Markov process on the space of real trees that is the continuum analogue of discrete Markov chains on binary trees. We construct this conjectured process via a consistent system of stationary evolutions…

Probability · Mathematics 2018-09-21 Noah Forman , Soumik Pal , Douglas Rizzolo , Matthias Winkel

The {\sc Directed Maximum Leaf Out-Branching} problem is to find an out-branching (i.e. a rooted oriented spanning tree) in a given digraph with the maximum number of leaves. In this paper, we obtain two combinatorial results on the number…

Data Structures and Algorithms · Computer Science 2008-03-06 N Alon , F. V. Fomin , G. Gutin , M. Krivelevich , S. Saurabh

We introduce a new, relatively simple, line-breaking construction of the $\alpha$-stable tree which realises its random finite-dimensional distributions. This is a direct analogue of Aldous' line-breaking construction of the Brownian…

Probability · Mathematics 2026-02-11 Christina Goldschmidt , Liam Hill

Deep Neural Networks (DNN) have demonstrated superior ability to extract high level embedding vectors from low level features. Despite the success, the serving time is still the bottleneck due to expensive run-time computation of multiple…

Machine Learning · Computer Science 2017-03-16 Jie Zhu , Ying Shan , JC Mao , Dong Yu , Holakou Rahmanian , Yi Zhang

We prove the rather counterintuitive result that there exist finite transitive graphs H and integers k such that the Free Uniform Spanning Forest in the direct product of the k-regular tree and H has infinitely many trees almost surely.…

Probability · Mathematics 2021-01-26 Gábor Pete , Ádám Timár

Recently proposed budding tree is a decision tree algorithm in which every node is part internal node and part leaf. This allows representing every decision tree in a continuous parameter space, and therefore a budding tree can be jointly…

Machine Learning · Computer Science 2014-12-22 Ozan İrsoy , Ethem Alpaydın

Study of random networks generally requires the nodes to be independently and uniformly distributed such as a Poisson point process. In this work, we venture beyond this standard paradigm and investigate a stochastic forest obtained from a…

Probability · Mathematics 2023-02-28 Rahul Roy , Kumarjit Saha , Anish Sarkar

Many of the tools developed for the theory of tree-decompositions of graphs do not work for directed graphs. In this paper we show that some of the most basic tools do work in the case where the model digraph is a directed path. Using these…

Combinatorics · Mathematics 2017-11-03 Joshua Erde

We prove that every component of the wired uniform spanning forest (WUSF) is one-ended almost surely in every transient reversible random graph, removing the bounded degree hypothesis required by earlier results. We deduce that every…

Probability · Mathematics 2018-05-01 Tom Hutchcroft

The Brownian web can be roughly described as a family of coalescing one-dimensional Brownian motions starting at all times in $\R$ and at all points of $\R$. It was introduced by Arratia; a variant was then studied by Toth and Werner;…

Probability · Mathematics 2011-11-10 P. A. Ferrari , L. R. G. Fontes , Xian-Yuan Wu

It is possible to represent each of a number of Markov chains as an evolving sequence of connected subsets of a directed acyclic graph that grow in the following way: initially, all vertices of the graph are unoccupied, particles are fed in…

Probability · Mathematics 2015-03-17 Steven N. Evans , Rudolf Gruebel , Anton Wakolbinger

The classical matrix-tree theorem relates the determinant of the combinatorial Laplacian on a graph to the number of spanning trees. We generalize this result to Laplacians on one- and two-dimensional vector bundles, giving a combinatorial…

Probability · Mathematics 2011-12-09 Richard Kenyon

We use Dirichlet form methods to construct and analyze a reversible Markov process, the stationary distribution of which is the Brownian continuum random tree. This process is inspired by the subtree prune and regraft (SPR) Markov chains…

Probability · Mathematics 2007-05-23 Steven N. Evans , Anita Winter

We study the accessibility percolation model on infinite trees. The model is defined by associating an absolute continuous random variable $X_v$ to each vertex $v$ of the tree. The main question to be considered is the existence or not of…

Probability · Mathematics 2018-03-28 Cristian F. Coletti , R. J. Gava , Pablo M. Rodriguez

For a digraph $D=(V(D), A(D))$, and a set $S\subseteq V(D)$ with $r\in S$ and $|S|\geq 2$, an $(S, r)$-tree is an out-tree $T$ rooted at $r$ with $S\subseteq V(T)$. Two $(S, r)$-trees $T_1$ and $T_2$ are said to be arc-disjoint if…

Combinatorics · Mathematics 2020-11-10 Yuefang Sun , Anders Yeo

Accessibility percolation is a new type of percolation problem inspired by evolutionary biology. To each vertex of a graph a random number is assigned and a path through the graph is called accessible if all numbers along the path are in…

Statistical Mechanics · Physics 2013-04-04 Stefan Nowak , Joachim Krug

The canonical tree-decomposition theorem, given by Robertson and Seymour in their seminal graph minors series, turns out to be one of the most important tool in structural and algorithmic graph theory. In this paper, we provide the…

Discrete Mathematics · Computer Science 2020-09-29 Archontia C. Giannopoulou , Ken-ichi Kawarabayashi , Stephan Kreutzer , O-joung Kwon

A spanning tree of a graph $G$ is a connected acyclic spanning subgraph of $G$. We consider enumeration of spanning trees when $G$ is a $2$-tree, meaning that $G$ is obtained from one edge by iteratively adding a vertex whose neighborhood…

Discrete Mathematics · Computer Science 2016-07-21 P. Renjith , N. Sadagopan , Douglas B. West