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Turbulence has been recognized as a factor of paramount importance for the survival or extinction of sinking phytoplankton species. However, dealing with its multiscale nature in models of coupled fluid and biological dynamics is a…

Fluid Dynamics · Physics 2021-12-10 Vinicius Beltram Tergolina , Enrico Calzavarini , Gilmar Mompean , Stefano Berti

Shear flow significantly affects the transport of swimming algae in suspension. For example, viscous and gravitational torques bias bottom-heavy cells to swim towards regions of downwelling fluid (gyrotaxis). It is necessary to understand…

Biological Physics · Physics 2015-03-20 O. A. Croze , G. Sardina , M. Ahmed , M. A. Bees , L. Brandt

We discuss a theoretical model for bidirectional cargo transport in biological cells, which is driven by teams of molecular motors and subject to thermal fluctuations. The model describes explicitly the directed motion of the molecular…

Biological Physics · Physics 2017-09-20 Sarah Klein , Cécile Appert-Rolland , Ludger Santen

The impact of rotation on the bio-convective instability in a phototactic algal suspension is investigated through a linear stability analysis in this article. The study primarily focuses on the suspension's phototactic behavior, which…

Dynamical Systems · Mathematics 2023-06-27 S. K. Rajput

In this study, we analyze the bioconvection in a suspension of phototactic algae that exhibits anisotropic scattering. The top layer of the suspension is illuminated by oblique collimated irradiation. During the study, the bottom boundary…

Dynamical Systems · Mathematics 2023-03-07 Sandeep Kumar , Preeti Sharma

Cells and other soft particles are often forced to flow in confined geometries in both laboratory and natural environments, where the elastic deformation induces an additional drag and pressure drop across the particle. In contrast with…

Fluid Dynamics · Physics 2025-07-09 Charles Paul Moore , Hiba Belkadi , Brouna Safi , Gabriel Amselem , Charles N. Baroud

Suspensions of unicellular microswimmers such as flagellated bacteria or motile algae exhibit spontaneous density heterogeneities at large enough concentrations. Based on the relative location of the biological actuation appendages i.e.…

Soft Condensed Matter · Physics 2017-11-27 Fabian Jan Schwarzendahl , Marco G. Mazza

Eukaryotic swimming cells such as spermatozoa, algae or protozoa use flagella or cilia to move in viscous fluids. The motion of their flexible appendages in the surrounding fluid induces propulsive forces that balance with the viscous drag…

Soft Condensed Matter · Physics 2023-10-06 Maciej Lisicki , Marcos F. Velho Rodrigues , Eric Lauga

We show the impact that scalar structures deformation and mixing has on the fate of plumes of waterborne contaminant transported through a chemically heterogeneous, partially adsorbing porous medium. Via pore-scale simulations, we follow…

Fluid Dynamics · Physics 2023-02-15 Dario Maggiolo , Oskar Modin , Angela Sasic Kalagasidis

In the experiment that first demonstrated gyrotactic behaviour of bottom-heavy swimming microalgae (e.g. Chlamydomonas), Kessler (Nature, vol. 313, 1985, pp. 218-220) showed that a beam-like structure, often referred to as a gyrotactic…

Fluid Dynamics · Physics 2020-10-28 Lloyd Fung , Rachel N. Bearon , Yongyun Hwang

The linear stability of a finite-depth algal suspension is investigated numerically with particular emphasis on the effects of angle of incidence. The suspension of phototactic algae is uniformly illuminated by both diffuse and oblique…

Dynamical Systems · Mathematics 2023-01-25 M. K. Panda , Shubham Kumar Rajput

The intermittent compact flow of glass beads in a vertical glass pipe of small diameter is studied experimentally by combining particle fraction, pressure, and air and grain flow rates measurements with a spatio-temporal analysis of the…

Soft Condensed Matter · Physics 2007-05-23 Yann Bertho , Frederique Giorgiutti-Dauphine , Jean-Pierre Hulin

Despite their importance in many biological, ecological and physical processes, microorganismal fluid flows under tight confinement have not been investigated experimentally. Strong screening of Stokelets in this geometry suggests that the…

Biological Physics · Physics 2019-12-18 Raphaël Jeanneret , Dmitri O. Pushkin , Marco Polin

Cavitation in tubes is a common occurrence in nature and engineering applications. Previous studies of cavitation bubble dynamics mainly consider bubbles in stagnant-water tubes, but the dynamics of cavitation bubbles in tubes with flow is…

Fluid Dynamics · Physics 2024-08-05 Nian Wang , Odumuyiwa A. Odumosu , Tianyou Wang , Zhizhao Che

Active fluids can develop spontaneous flow instabilities and complex patterns. However, spatio-temporal control of active particles has remained challenging, despite its relevance in biological and applied contexts. Here, we harnessed…

Soft Condensed Matter · Physics 2025-09-23 Isabelle Eisenmann , Marco Vona , Nicolas Desprat , Takuji Ishikawa , Eric Lauga , Raphaël Jeanneret

Several meters below the coastal ocean surface there are areas of high ecological activity that contain thin layers of concentrated motile phytoplankton. Gyrotactic trapping has been proposed as a potential mechanism for layer formation of…

Fluid Dynamics · Physics 2019-05-22 Smitha Maretvadakethope , Eric E. Keaveny , Yongyun Hwang

Dense bacterial suspensions at fluid interfaces provide a natural platform to explore active turbulence in a dimensional mismatch: active units are restricted to a two-dimensional surface, while the induced flows extend into the surrounding…

Soft Condensed Matter · Physics 2025-11-18 Yuanfeng Yin , Bokai Zhang , H. P. Zhang , Shuo Guo

Interactions between microorganisms and solid boundaries play an important role in biological processes, like egg fertilisation, biofilm formation and soil colonisation, where microswimmers move within a structured environment. Despite…

Biological Physics · Physics 2015-12-23 Matteo Contino , Enkeleida Lushi , Idan Tuval , Vasily Kantsler , Marco Polin

From multicellular tissues to bacterial colonies, three dimensional cellular structures arise through the interaction of cellular activities and mechanical forces. Simple bacterial communities provide model systems for analyzing such…

Soft Condensed Matter · Physics 2024-01-11 Ana Carpio , Elena Cebrian , David R. Espeso , Perfecto Vidal

The measurement of a quantitative and macroscopic parameter to estimate the global motility of a large population of swimming biological cells is a challenge Experiments on the rheology of active suspensions have been performed. Effective…

Soft Condensed Matter · Physics 2014-12-12 Salima Rafai , Levan Jibuti , Philippe Peyla