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Nowadays, networks are almost ubiquitous. In the past decade, community detection received an increasing interest as a way to uncover the structure of networks by grouping nodes into communities more densely connected internally than…

Data Structures and Algorithms · Computer Science 2015-03-20 Erwan Le Martelot , Chris Hankin

Nonnegative matrix factorization (NMF) has become a prominent technique for the analysis of image databases, text databases and other information retrieval and clustering applications. In this report, we define an exact version of NMF. Then…

Numerical Analysis · Computer Science 2007-09-27 Stephen A. Vavasis

The paper discusses a pooling mechanism to induce subsampling in graph structured data and introduces it as a component of a graph convolutional neural network. The pooling mechanism builds on the Non-Negative Matrix Factorization (NMF) of…

Machine Learning · Computer Science 2019-09-10 Davide Bacciu , Luigi Di Sotto

Motivated by multi-subject experiments in neuroimaging studies, we develop a modeling framework for joint community detection in a group of related networks, which can be considered as a sample from a population of networks. The proposed…

Applications · Statistics 2020-03-24 Subhadeep Paul , Yuguo Chen

Nonnegative matrix factorization (NMF) is a popular dimension reduction technique that produces interpretable decomposition of the data into parts. However, this decompostion is not generally identifiable (even up to permutation and…

Machine Learning · Computer Science 2016-04-05 W. Pan , F. Doshi-Velez

Nonnegative matrix factorization (NMF) is a popular model in the field of pattern recognition. It aims to find a low rank approximation for nonnegative data M by a product of two nonnegative matrices W and H. In general, NMF is NP-hard to…

Machine Learning · Computer Science 2021-09-07 Junjun Pan , Michael K. Ng

The problem of community detection is relevant in many disciplines of science and modularity optimization is the widely accepted method for this purpose. It has recently been shown that this approach presents a resolution limit by which it…

Physics and Society · Physics 2015-05-13 A. D. Medus , C. O. Dorso

Various Non-negative Matrix factorization (NMF) based methods add new terms to the cost function to adapt the model to specific tasks, such as clustering, or to preserve some structural properties in the reduced space (e.g., local…

Massive network datasets are becoming increasingly common in scientific applications. Existing community detection methods encounter significant computational challenges for such massive networks due to two reasons. First, the full network…

Methodology · Statistics 2025-03-24 Subhankar Bhadra , Marianna Pensky , Srijan Sengupta

This paper addresses the problem of community detection in networked data that combines link and content analysis. Most existing work combines link and content information by a generative model. There are two major shortcomings with the…

Social and Information Networks · Computer Science 2012-05-14 Tianbao Yang , Rong Jin , Yun Chi , Shenghuo Zhu

The Nonnegative Matrix Factorization (NMF) of the rating matrix has shown to be an effective method to tackle the recommendation problem. In this paper we propose new methods based on the NMF of the rating matrix and we compare them with…

Machine Learning · Computer Science 2019-08-30 Gianna M. Del Corso , Francesco Romani

As a fundamental structure in real-world networks, in addition to graph topology, communities can also be reflected by abundant node attributes. In attributed community detection, probabilistic generative models (PGMs) have become the…

Social and Information Networks · Computer Science 2022-05-31 Ren Ren , Jinliang Shao , Adrian N. Bishop , Wei Xing Zheng

Detecting significant community structure in networks with incomplete observations is challenging because the evidence for specific solutions fades away with missing data. For example, recent research shows that flow-based community…

Social and Information Networks · Computer Science 2021-12-14 Jelena Smiljanić , Christopher Blöcker , Daniel Edler , Martin Rosvall

Community discovery in the social network is one of the tremendously expanding areas which earn interest among researchers for the past one decade. There are many already existing algorithms. However, new seed-based algorithms establish an…

Social and Information Networks · Computer Science 2018-08-13 Belfin R , E. Grace Mary Kanaga , Piotr Bródka

The identification of modular structures is essential for characterizing real networks formed by a mesoscopic level of organization where clusters contain nodes with a high internal degree of connectivity. Many methods have been developed…

Physics and Society · Physics 2015-03-04 Diego R. Amancio , Osvaldo N. Oliveira , Luciano da F. Costa

Community detection methods can be used to explore the structure of complex systems. The well-known modular configurations in complex financial systems indicate the existence of community structures. Here we analyze the community properties…

Portfolio Management · Quantitative Finance 2021-12-28 Longfeng Zhao , Chao Wang , Gang-Jin Wang , H. Eugene Stanley , Lin Chen

Finding community structures in social networks is considered to be a challenging task as many of the proposed algorithms are computationally expensive and does not scale well for large graphs. Most of the community detection algorithms…

Social and Information Networks · Computer Science 2023-01-30 Partha Basuchowdhuri , Satyaki Sikdar , Varsha Nagarajan , Khusbu Mishra , Surabhi Gupta , Subhashis Majumder

Mutational signatures are patterns of somatic mutations in tumor genomes that provide insights into underlying mutagenic processes and cancer origin. Developing reliable methods for their estimation is of growing importance in cancer…

Applications · Statistics 2025-02-04 Blake Hansen , Isabella N. Grabski , Giovanni Parmigiani , Roberta De Vito

Community detection and link prediction are both of great significance in network analysis, which provide very valuable insights into topological structures of the network from different perspectives. In this paper, we propose a novel…

Social and Information Networks · Computer Science 2017-07-11 Hui-Min Cheng , Yi-Zi Ning , Zhao Yin , Chao Yan , Xin Liu , Zhong-Yuan Zhang

Over the past few years, there has been a considerable spread of microarray technology in many biological patterns, particularly in those pertaining to cancer diseases like leukemia, prostate, colon cancer, etc. The primary bottleneck that…

Quantitative Methods · Quantitative Biology 2020-07-20 Parth Patel , Kalpdrum Passi , Chakresh Kumar Jain