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Conventional studies of biomolecular behaviors rely largely on the construction of kinetic schemes. Since the selection of these networks is not unique, a concern is raised whether and under which conditions hierarchical schemes can reveal…

Molecular Networks · Quantitative Biology 2015-07-07 De-Ming Deng , Cheng-Hung Chang

We propose generalizations of a number of standard network models, including the classic random graph, the configuration model, and the stochastic block model, to the case of time-varying networks. We assume that the presence and absence of…

Social and Information Networks · Computer Science 2018-05-02 Xiao Zhang , Cristopher Moore , M. E. J. Newman

We consider a class of discrete time Markov chains with state space [0,1] and the following dynamics. At each time step, first the direction of the next transition is chosen at random with probability depending on the current location. Then…

Probability · Mathematics 2014-12-04 Shaun McKinlay , Konstantin Borovkov

In this paper, we study the connectivity of a one-dimensional soft random geometric graph (RGG). The graph is generated by placing points at random on a bounded line segment and connecting pairs of points with a probability that depends on…

Probability · Mathematics 2021-01-04 Michael Wilsher , Carl P. Dettmann , Ayalvadi Ganesh

Using random walk sampling methods for feature learning on networks, we develop a method for generating low-dimensional node embeddings for directed graphs and identifying transition states of stochastic chemical reacting systems. We…

Numerical Analysis · Mathematics 2020-10-30 Paula Mercurio , Di Liu

We consider two classes of natural stochastic processes on finite unlabeled graphs. These are Euclidean stochastic optimization algorithms on the adjacency matrix of weighted graphs and a modified version of the Metropolis MCMC algorithm on…

Probability · Mathematics 2023-10-17 Siva Athreya , Soumik Pal , Raghav Somani , Raghavendra Tripathi

We study dynamical systems forced by a combination of random and deterministic noise and provide criteria, in terms of Lyapunov exponents, for the existence of random attractors with continuous structure in the fibres. For this purpose, we…

Dynamical Systems · Mathematics 2017-01-16 Tobias Jäger , Gerhard Keller

A basic model of a dynamical distribution network is considered, modeled as a directed graph with storage variables corresponding to every vertex and flow inputs corresponding to every edge, subject to unknown but constant inflows and…

Optimization and Control · Mathematics 2014-03-24 Jieqiang Wei , Arjan van der Schaft

Understanding the structural complexity and predictability of complex networks is a central challenge in network science. Although recent studies have revealed a relationship between compression-based entropy and link prediction…

Social and Information Networks · Computer Science 2025-10-14 Sebastián Brzovic , Cristóbal Rojas , Andrés Abeliuk

This work studies the limitations of uniquely identifying the structure (i.e., topology) of a networked linear system from partial measurements of its nodal dynamics. In general, many networks can be consistent with these measurements; this…

Systems and Control · Electrical Eng. & Systems 2026-03-13 Jaidev Gill , Jing Shuang Li

Active biological flow networks pervade nature and span a wide range of scales, from arterial blood vessels and bronchial mucus transport in humans to bacterial flow through porous media or plasmodial shuttle streaming in slime molds.…

Biological Physics · Physics 2016-07-28 Francis G. Woodhouse , Aden Forrow , Joanna B. Fawcett , Jörn Dunkel

Mostof the existing literature on supervised machine learning problems focuses on the case when the training data set is drawn from an i.i.d. sample. However, many practical problems are characterized by temporal dependence and strong…

Statistics Theory · Mathematics 2023-01-23 Nikola Sandrić , Stjepan Šebek

Extremal graphical models encode the conditional independence structure of multivariate extremes. Key statistics for learning extremal graphical structures are empirical extremal variograms, for which we prove non-asymptotic concentration…

Statistics Theory · Mathematics 2025-11-05 Sebastian Engelke , Michaël Lalancette , Stanislav Volgushev

Adaptive transport networks in biological and physical systems exhibit hierarchical organization, characteristic channel spacing, and robust scaling relations. Existing adaptive network models, formulated on a lattice, successfully…

Adaptation and Self-Organizing Systems · Physics 2026-05-18 Sidney Holden , Mia C. Morrell , Geoffrey Vasil , Eleni Katifori

A finite ergodic Markov chain is said to exhibit cutoff if its distance to stationarity remains close to 1 over a certain number of iterations and then abruptly drops to near 0 on a much shorter time scale. Discovered in the context of card…

Probability · Mathematics 2015-04-10 Anna Ben-Hamou , Justin Salez

Statistical inference for exponential-family models of random graphs with dependent edges is challenging. We stress the importance of additional structure and show that additional structure facilitates statistical inference. A simple…

Statistics Theory · Mathematics 2020-03-13 Michael Schweinberger , Jonathan Stewart

In this work we study the dynamics of systems composed of numerous interacting elements interconnected through a random weighted directed graph, such as models of random neural networks. We develop an original theoretical approach based on…

Chaotic Dynamics · Physics 2015-09-30 Gilles Wainrib , Mathieu Galtier

The microscopic and macroscopic dynamics of random networks is investigated in the strong-dilution limit (i.e. for sparse networks). By simulating chaotic maps, Stuart-Landau oscillators, and leaky integrate-and-fire neurons, we show that a…

Disordered Systems and Neural Networks · Physics 2012-12-24 Stefano Luccioli , Simona Olmi , Antonio Politi , Alessandro Torcini

We study connected graphs with a fixed degree sequence, in the sparse setting where the number of edges grows linearly in the number of vertices. Using the relation to the configuration model, we identify the number of such connected graphs…

Combinatorics · Mathematics 2026-05-11 Sasha Bell , Serte Donderwinkel , Remco van der Hofstad

Models of complex networks often incorporate node-intrinsic properties abstracted as hidden variables. The probability of connections in the network is then a function of these variables. Real-world networks evolve over time, and many…

Physics and Society · Physics 2021-05-19 Harrison Hartle , Fragkiskos Papadopoulos , Dmitri Krioukov