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Graphs are a basic tool for the representation of modern data. The richness of the topological information contained in a graph goes far beyond its mere interpretation as a one-dimensional simplicial complex. We show how topological…

Combinatorics · Mathematics 2018-10-11 Mattia G. Bergomi , Massimo Ferri , Lorenzo Zuffi

We show that for a number of parameterized problems for which only $2^{O(k)} n^{O(1)}$ time algorithms are known on general graphs, subexponential parameterized algorithms with running time $2^{O(k^{1-\frac{1}{1+\delta}} \log^2 k)}…

Data Structures and Algorithms · Computer Science 2016-10-26 Dániel Marx , Marcin Pilipczuk

Dense subgraph extraction is a fundamental problem in graph analysis and data mining, aimed at identifying cohesive and densely connected substructures within a given graph. It plays a crucial role in various domains, including social…

Data Structures and Algorithms · Computer Science 2024-03-01 Chia-Yang Hung , Chih-Ya Shen

Statisticians and quantitative neuroscientists have actively promoted the use of independence relationships for investigating brain networks, genomic networks, and other measurement technologies. Estimation of these graphs depends on two…

Methodology · Statistics 2014-10-15 Fang Han , Huitong Qiu , Han Liu , Brian Caffo

We consider algorithms for finding and counting small, fixed graphs in sparse host graphs. In the non-sparse setting, the parameters treedepth and treewidth play a crucial role in fast, constant-space and polynomial-space algorithms…

Data Structures and Algorithms · Computer Science 2023-01-09 Balagopal Komarath , Anant Kumar , Suchismita Mishra , Aditi Sethia

Computing subgraph frequencies is a fundamental task that lies at the core of several network analysis methodologies, such as network motifs and graphlet-based metrics, which have been widely used to categorize and compare networks from…

Data Structures and Algorithms · Computer Science 2021-12-30 Pedro Ribeiro , Pedro Paredes , Miguel E. P. Silva , David Aparicio , Fernando Silva

We solve the subgraph isomorphism problem in planar graphs in linear time, for any pattern of constant size. Our results are based on a technique of partitioning the planar graph into pieces of small tree-width, and applying dynamic…

Data Structures and Algorithms · Computer Science 2007-05-23 David Eppstein

This paper introduces and demonstrates a computational pipeline for the statistical analysis of shape graph datasets, namely geometric networks embedded in 2D or 3D spaces. Unlike traditional abstract graphs, our purpose is not only to…

Machine Learning · Computer Science 2026-02-19 Murad Hossen , Demetrio Labate , Nicolas Charon

The increasing prevalence of relational data describing interactions among a target population has motivated a wide literature on statistical network analysis. In many applications, interactions may involve more than two members of the…

Methodology · Statistics 2021-11-03 Kathryn Turnbull , Simón Lunagómez , Christopher Nemeth , Edoardo Airoldi

A hypergraph is a set V of vertices and a set of non-empty subsets of V, called hyperedges. Unlike graphs, hypergraphs can capture higher-order interactions in social and communication networks that go beyond a simple union of pairwise…

Data Structures and Algorithms · Computer Science 2012-02-02 Jianhang Gao , Qing Zhao , Wei Ren , Ananthram Swami , Ram Ramanathan , Amotz Bar-Noy

In this paper we give fast distributed graph algorithms for detecting and listing small subgraphs, and for computing or approximating the girth. Our algorithms improve upon the state of the art by polynomial factors, and for girth, we…

Data Structures and Algorithms · Computer Science 2021-01-20 Keren Censor-Hillel , Orr Fischer , Tzlil Gonen , François Le Gall , Dean Leitersdorf , Rotem Oshman

We present a novel distributed algorithm for counting all four-node induced subgraphs in a big graph. These counts, called the $4$-profile, describe a graph's connectivity properties and have found several uses ranging from bioinformatics…

Social and Information Networks · Computer Science 2016-04-05 Ethan R. Elenberg , Karthikeyan Shanmugam , Michael Borokhovich , Alexandros G. Dimakis

In this paper we focus on the problem of finding (small) subhypergraphs in a (large) hypergraph. We use this problem to illustrate that reducing hypergraph problems to graph problems by working with the 2-section is not always a reasonable…

Fully dynamic graph is a data structure that (1) supports edge insertions and deletions and (2) answers problem specific queries. The time complexity of (1) and (2) are referred to as the update time and the query time respectively. There…

Data Structures and Algorithms · Computer Science 2014-04-30 Yoichi Iwata , Keigo Oka

A dynamic graph algorithm is a data structure that answers queries about a property of the current graph while supporting graph modifications such as edge insertions and deletions. Prior work has shown strong conditional lower bounds for…

Data Structures and Algorithms · Computer Science 2023-01-30 Monika Henzinger , Ami Paz , A. R. Sricharan

Topology identification and inference of processes evolving over graphs arise in timely applications involving brain, transportation, financial, power, as well as social and information networks. This chapter provides an overview of graph…

Signal Processing · Electrical Eng. & Systems 2025-12-12 Gonzalo Mateos , Yanning Shen , Georgios B. Giannakis , Ananthram Swami

Graph pattern matching algorithms to handle million-scale dynamic graphs are widely used in many applications such as social network analytics and suspicious transaction detections from financial networks. On the other hand, the computation…

Databases · Computer Science 2019-07-10 Hiroki Kanezashi , Toyotaro Suzumura , Dario Garcia-Gasulla , Min-hwan Oh , Satoshi Matsuoka

We prove the following theorem. Given a planar graph $G$ and an integer $k$, it is possible in polynomial time to randomly sample a subset $A$ of vertices of $G$ with the following properties: (i) $A$ induces a subgraph of $G$ of treewidth…

Data Structures and Algorithms · Computer Science 2016-04-21 Fedor V. Fomin , Daniel Lokshtanov , Dániel Marx , Marcin Pilipczuk , Michał Pilipczuk , Saket Saurabh

Graph pattern matching is a routine process for a wide variety of applications such as social network analysis. It is typically defined in terms of subgraph isomorphism which is NP-Complete. To lower its complexity, many extensions of graph…

Databases · Computer Science 2018-04-13 Houari Mahfoud

Bidirected graphs are a common generalisation of directed graphs where arcs can also be incoming to both their incident nodes, or outgoing from both their incident nodes. Such arcs allow a walk to change direction. Some algorithms can…

Data Structures and Algorithms · Computer Science 2026-05-14 Sebastian Schmidt , Juha Harviainen , Corentin Moumard , Aleksandr Politov , Francisco Sena , Alexandru I. Tomescu