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Notch signaling is a ubiquitous and versatile intercellular signaling system that drives collective behaviors and pattern formation in biological tissues. During embryonic development, Notch is involved in generation of collective…

Molecular Networks · Quantitative Biology 2024-08-09 Marcos Wappner , Koichiro Uriu , Andrew C. Oates , Luis G. Morelli

Rhythmic and sequential subdivision of the elongating vertebrate embryonic body axis into morphological somites is controlled by an oscillating multicellular genetic network termed the segmentation clock. This clock operates in the…

Molecular Networks · Quantitative Biology 2009-01-08 Luis G. Morelli , Saul Ares , Leah Herrgen , Christian Schroeter , Frank Julicher , Andrew C. Oates

The temporal behaviour of segmentation clock oscillations show phase synchrony via mean field like coupling of delta protein restricting to nearest neighbours only, in a configuration of cells arranged in a regular three dimensional array.…

A number of biological rhythms originate from networks comprised of multiple cellular oscillators. But analytical results are still lacking on the collective oscillation period of inter-coupled gene regulatory oscillators, which, as has…

Systems and Control · Computer Science 2014-02-26 Yongqiang Wang , Yutaka Hori , Shinji Hara , Francis J. Doyle

Many biological oscillators are arranged in networks composed of many inter-coupled cellular oscillators. However, results are still lacking on the collective oscillation period of inter-coupled gene regulatory oscillators, which, as has…

Systems and Control · Computer Science 2012-06-05 Yongqiang Wang , Yutaka Hori , Shinji Hara , Francis J. Doyle

Using a stochastic individual-based modelling approach, we examine the role that Delta-Notch signalling plays in the regulation of a robust and reliable somite segmentation clock. We find that not only can Delta-Notch signalling synchronise…

Subcellular Processes · Quantitative Biology 2019-11-28 Joseph W. Baron , Tobias Galla

We study the effects of delayed coupling on timing and pattern formation in spatially extended systems of dynamic oscillators. Starting from a discrete lattice of coupled oscillators, we derive a generic continuum theory for collective…

Chaotic Dynamics · Physics 2012-05-21 Saul Ares , Luis G. Morelli , David J. Jorg , Andrew C. Oates , Frank Julicher

Periodic forcing of nonlinear oscillators leads to a large number of dynamic behaviors. The coupling of the cell-cycle to the circadian clock provides a biological realization of such forcing. Using high throughput single-cell microscopy,…

Unveiling the mechanisms through which the somitogenesis regulatory network exerts spatiotemporal control of the somitic patterning has required a combination of experimental and mathematical modeling strategies. Significant progress has…

Cell Behavior · Quantitative Biology 2015-03-13 Eder Zavala , Moisés Santillán

Biological rhythms are generated by pacemaker organs, such as the heart pacemaker organ (the sinoatrial node) and the master clock of the circadian rhythms (the suprachiasmatic nucleus), which are composed of a network of autonomously…

Cell Behavior · Quantitative Biology 2016-08-23 Hiroshi Kori , Yoji Kawamura , Naoki Masuda

In this study, we construct such systems with the Kuramoto model of globally coupled oscillators with time-delayed positive and negative couplings to explore the impact of coupling time delays in the collective frequency of synchronized…

Biological Physics · Physics 2024-08-13 Hui Wu , Mukesh Dhamala

The production process of integrated electronic circuitry inherently leads to large heterogeneities on the component level. For electronic clock networks this implies detuned intrinsic frequencies and differences in coupling strength and…

Adaptation and Self-Organizing Systems · Physics 2019-09-04 Nirmal Punetha , Lucas Wetzel

Biological oscillators coordinate individual cellular components so that they function coherently and collectively. They are typically composed of multiple feedback loops, and period mismatch is unavoidable in biological implementations. We…

Biological Physics · Physics 2013-05-06 Yoshihiko Hasegawa , Masanori Arita

We study numerically the effects of time delay in networks of delay-coupled excitable FitzHugh Nagumo systems with dissipation. The generation of periodic self-sustained oscillations and its threshold are analyzed depending on the…

Adaptation and Self-Organizing Systems · Physics 2023-07-19 A. V. Bukh , I. A. Shepelev , E. M. Elizarov , S. S. Muni , E. Schöll , G. I. Strelkova

Network couplings of oscillatory large-scale systems, such as the brain, have a space-time structure composed of connection strengths and signal transmission delays. We provide a theoretical framework, which allows treating the spatial…

We study synaptically coupled neuronal networks to identify the role of coupling delays in network's synchronized behaviors. We consider a network of excitable, relaxation oscillator neurons where two distinct populations, one excitatory…

Neurons and Cognition · Quantitative Biology 2018-01-01 Hwayeon Ryu , Sue Ann Campbell

In most vertebrate species, the body axis is generated by the formation of repeated transient structures called somites. This spatial periodicity in somitogenesis has been related to the temporally sustained oscillations in certain mRNAs…

Quantitative Methods · Quantitative Biology 2009-11-13 K. I. Mazzitello , C. M. Arizmendi , H. G. E. Hentschel

Autonomous circadian clocks drive daily rhythms in physiology and behaviour. A network of coupled neurons, the suprachiasmatic nucleus (SCN), serves as a robust self-sustained circadian pacemaker. Synchronization of this timer to the…

Adaptation and Self-Organizing Systems · Physics 2015-05-28 G. Bordyugov , A. E. Granada , H. Herzel

Proper vertebrae formation relies on a tissue-wide oscillator called the segmentation clock. Individual cellular oscillators in the presomitic mesoderm are modulated by intercellular coupling and external signals, leading to the propagation…

Molecular Networks · Quantitative Biology 2024-05-27 Paul François , Victoria Mochulska

In systems of coupled oscillators, the effects of complex signaling can be captured by time delays and phase shifts. Here, we show how time delays and phase shifts lead to different oscillator dynamics and how synchronization rates can be…

Adaptation and Self-Organizing Systems · Physics 2018-03-30 David J. Jörg , Luis G. Morelli , Saúl Ares , Frank Jülicher
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