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Data Physicalization focuses on understanding how physical representations of data can support communication, learning and problem-solving. As an emerging area, Data Physicalization research needs conceptual foundations to support thinking…

Human-Computer Interaction · Computer Science 2023-08-14 Champika Ranasinghe , Auriol Degbelo

The past decade has witnessed a dramatic increase in the size and scope of biological and behavioral experiments. These experiments are providing an unprecedented level of detail and depth of data. However, this increase in data presents…

Quantitative Methods · Quantitative Biology 2014-04-03 Samuel V. Scarpino , Ross Gillette , David Crews

Bayesian variable selection is a powerful tool for data analysis, as it offers a principled method for variable selection that accounts for prior information and uncertainty. However, wider adoption of Bayesian variable selection has been…

Methodology · Statistics 2023-12-06 Martin Jankowiak

By creating networks of biochemical pathways, communities of micro-organisms are able to modulate the properties of their environment and even the metabolic processes within their hosts. Next-generation high-throughput sequencing has led to…

Applications · Statistics 2023-03-28 Molly G. Hayes , Morgan G. I. Langille , Hong Gu

We propose a method called integrated diffusion for combining multimodal datasets, or data gathered via several different measurements on the same system, to create a joint data diffusion operator. As real world data suffers from both local…

Machine Learning · Computer Science 2022-03-07 Manik Kuchroo , Abhinav Godavarthi , Alexander Tong , Guy Wolf , Smita Krishnaswamy

The development of medical vision-language foundation models has attracted significant attention in the field of medicine and healthcare due to their promising prospect in various clinical applications. While previous studies have commonly…

Computer Vision and Pattern Recognition · Computer Science 2024-02-27 Weijian Huang , Cheng Li , Hong-Yu Zhou , Jiarun Liu , Hao Yang , Yong Liang , Guangming Shi , Hairong Zheng , Shanshan Wang

In this paper, we ask if it is possible to increase the interpretability in multivariate analysis by aligning and projecting covariates onto comparative subspaces. We demonstrate our method as well as the interpretative power of PLS…

Quantitative Methods · Quantitative Biology 2021-03-18 Edward Tjörnhammar , Richard Tjörnhammar

Multidimensional unfolding methods are widely used for visualizing item response data. Such methods project respondents and items simultaneously onto a low-dimensional Euclidian space, in which respondents and items are represented by ideal…

Methodology · Statistics 2020-09-04 Yunxiao Chen , Zhiliang Ying , Haoran Zhang

A complex system comprises multiple interacting entities whose interdependencies form a unified whole, exhibiting emergent behaviours not present in individual components. Examples include the human brain, living cells, soft matter, Earth's…

We present experiences and lessons learned from increasing data readiness of heterogeneous data for artificial intelligence projects using visual analysis methods. Increasing the data readiness level involves understanding both the data as…

Methodology · Statistics 2024-09-09 Mattias Tiger , Daniel Jakobsson , Anders Ynnerman , Fredrik Heintz , Daniel Jönsson

A main challenge of data-driven sciences is how to make maximal use of the progressively expanding databases of experimental datasets in order to keep research cumulative. We introduce the idea of a modeling-based dataset retrieval engine…

Quantitative Methods · Quantitative Biology 2015-06-19 Ali Faisal , Jaakko Peltonen , Elisabeth Georgii , Johan Rung , Samuel Kaski

Datasets of visualization play a crucial role in automating data-driven visualization pipelines, serving as the foundation for supervised model training and algorithm benchmarking. In this paper, we survey the literature on visualization…

Human-Computer Interaction · Computer Science 2024-07-24 Can Liu , Ruike Jiang , Shaocong Tan , Jiacheng Yu , Chaofan Yang , Hanning Shao , Xiaoru Yuan

Data visualization and analytics are nowadays one of the corner-stones of Data Science, turning the abundance of Big Data being produced through modern systems into actionable knowledge. Indeed, the Big Data era has realized the…

Databases · Computer Science 2023-11-21 Nikos Bikakis

Mathematical modelling allows us to concisely describe fundamental principles in biology. Analysis of models can help to both explain known phenomena, and predict the existence of new, unseen behaviours. Model analysis is often a complex…

Quantitative Methods · Quantitative Biology 2020-08-13 Mark Blyth , Ludovic Renson , Lucia Marucci

Dimensionality reduction is used as an important tool for unraveling the complexities of high-dimensional datasets in many fields of science, such as cell biology, chemical informatics, and physics. Visualizations of the dimensionally…

Human-Computer Interaction · Computer Science 2025-07-16 Dylan Cashman , Mark Keller , Hyeon Jeon , Bum Chul Kwon , Qianwen Wang

It is not unusual for a data analyst to encounter data sets distributed across several computers. This can happen for reasons such as privacy concerns, efficiency of likelihood evaluations, or just the sheer size of the whole data set. This…

Computation · Statistics 2018-05-22 Randy C. S. Lai , J. Hannig , Thomas C. M. Lee

Visualisation facilitates the understanding of scientific data both through exploration and explanation of visualised data. Provenance contributes to the understanding of data by containing the contributing factors behind a result. With the…

Databases · Computer Science 2015-02-06 Bilal Arshad , Kamran Munir , Richard McClatchey , Saad Liaquat

Recent technological advances in many domains including both genomics and brain imaging have led to an abundance of high-dimensional and correlated data being routinely collected. Classical multivariate approaches like Multivariate Analysis…

Methodology · Statistics 2018-11-20 Maxime Turgeon , Celia MT Greenwood , Aurelie Labbe

Co-occurrence statistics based word embedding techniques have proved to be very useful in extracting the semantic and syntactic representation of words as low dimensional continuous vectors. In this work, we discovered that dictionary…

Computation and Language · Computer Science 2021-03-16 Juexiao Zhang , Yubei Chen , Brian Cheung , Bruno A Olshausen

Visualization techniques are well developed for many problem domains, but these systems break down for datasets which are very large or multidimensional. Techniques for data which is discrete rather than continuous are also less well…

Astrophysics · Physics 2007-05-23 Joel Welling , Mark Derthick
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