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This paper is a self-contained development of an invariant of graphs embedded in three-dimensional Euclidean space using the Jones polynomial and skein theory. Some examples of the invariant are computed. An unlinked embedded graph is one…
The presence of slipknots in configurations of proteins and DNA has been shown to affect their functionality, or alter it entirely. Historically, polymers are modeled as polygonal chains in space. As an alternative to space curves, we…
We produce embeddings of knots in thin position that admit compressible thin levels. We also find the bridge number of tangle sums where each tangle is high distance.
The knotting probability is defined by the probability with which an $N$-step self-avoiding polygon (SAP) with a fixed type of knot appears in the configuration space. We evaluate these probabilities for some knot types on a simple cubic…
In this note, we attempt to find counterexamples to the conjecture that the ideal form of a knot, that which minimizes its contour length while respecting a no-overlap constraint, also minimizes the volume of the knot, as determined by its…
We introduce and study knotoids. Knotoids are represented by diagrams in a surface which differ from the usual knot diagrams in that the underlying curve is a segment rather than a circle. Knotoid diagrams are considered up to Reidemeister…
We describe four hyperbolic knot complements in $\mathbb{S}^3$, each of which covers a prism orbifold: the quotient of $\mathbb{H}^3$ by the action of a discrete group generated by reflections in the faces of a polyhedron that has the…
Hom and Wu introduced the knot concordance invariant $\nu^{+}$ for knots in $S^{3}$ and proved that it gives a lower bound for the slice genus. Wu and Yang extended $\nu^{+}$ to knots in rational homology $3$-spheres, where it gives a lower…
We present experimental results on knotting in off-lattice self-avoiding polygons in the bead-chain model. Using Clisby's tree data structure and the scale-free pivot algorithm, for each $k$ between $10$ and $27$ we generated $2^{43-k}$…
We consider classes of fundamental groups of complements of various kinds of codimension 2 embeddings and show that, in general, the problem of deciding whether or not a group in one class belongs to a smaller class is algorithmically…
We introduce a new technique for studying classical knots with the methods of virtual knot theory. Let $K$ be a knot and $J$ a knot in the complement of $K$ with $\text{lk}(J,K)=0$. Suppose there is covering space $\pi_J: \Sigma \times…
It is natural to ask how many isotopy classes of embedded essential surfaces lie in a given 3-manifold. The first bounds on the number of such surfaces were exponential, using normal surfaces. More recently, by restricting to alternating…
By a fixed continuous map from a $3$-space to itself, a knot in the $3$-space may be mapped to another knot in the $3$-space. We analyze possible knot types of them. Then we map a knot repeatedly by a fixed continuous map and analyze…
We describe an algorithm that recognizes some (perhaps all) intrinsically knotted (IK) graphs, and can help find knotless embeddings for graphs that are not IK. The algorithm, implemented as a Mathematica program, has already been used by…
We introduce swept-area pseudometrics on ropelength-filtered spaces of knot representatives. For a knot type \(K\) and a ropelength level \(\Lambda\), admissible isotopies are required to pass through curves of thickness at least one and…
We introduce a notion of intrinsic linking and knotting for virtual spatial graphs. Our theory gives two filtrations of the set of all graphs, allowing us to measure, in a sense, how intrinsically linked or knotted a graph is; we show that…
We initiate the study of classical knots through the homotopy class of the n-th evaluation map of the knot, which is the induced map on the compactified n-point configuration space. Sending a knot to its n-th evaluation map realizes the…
We explore a novel method to generate and characterize complex networks by means of their embedding on hyperbolic surfaces. Evolution through local elementary moves allows the exploration of the ensemble of networks which share common…
We give two different, statistically consistent definitions of the length l of a prime knot tied into a polymer ring. In the good solvent regime the polymer is modelled by a self avoiding polygon of N steps on cubic lattice and l is the…
This work deals with the construction of networks of topological defects in models described by a single complex scalar field. We take advantage of the deformation procedure recently used to describe kinklike defects in order to build…