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Phylogenetic trees are simple models of evolutionary processes. They describe conditionally independent divergent evolution of taxa from common ancestors. Phylogenetic trees commonly do not have enough flexibility to adequately model all…

Populations and Evolution · Quantitative Biology 2025-11-11 Jonathan D. Mitchell , Barbara R. Holland

Given a set of basic areas, the territory design problem asks to create a predefined number of territories, each containing at least one basic area, such that an objective function is optimized. Desired properties of territories often…

Optimization and Control · Mathematics 2015-05-06 Nitin Ahuja , Matthias Bender , Peter Sanders , Christian Schulz , Andreas Wagner

We investigate a probabilistic cellular automaton model which has been introduced recently. This model describes single-lane traffic flow on a ring and generalizes the asymmetric exclusion process models. We study the equilibrium properties…

Condensed Matter · Physics 2009-10-22 M. Schreckenberg , A. Schadschneider , K. Nagel , N. Ito

We analyze the statistics of the shortest and fastest paths on the road network between randomly sampled end points. To a good approximation, these optimal paths are found to be directed in that their lengths (at large scales) are linearly…

Statistical Mechanics · Physics 2017-11-08 A. P. Solon , G. Bunin , S. Chu , M. Kardar

A model for traffic flow in street networks or material flows in supply networks is presented, that takes into account the conservation of cars or materials and other significant features of traffic flows such as jam formation, spillovers,…

Fluid Dynamics · Physics 2016-08-14 Dirk Helbing , Jan Siegmeier , Stefan Lämmer

We consider a random geometric hypergraph model based on an underlying bipartite graph. Nodes and hyperedges are sampled uniformly in a domain, and a node is assigned to those hyperedges that lie with a certain radius. From a modelling…

Probability · Mathematics 2023-09-19 Henry-Louis de Kergorlay , Desmond J. Higham

This letter addresses the problem of modeling the highway systems of different countries by using complex networks formalism. More specifically, we compare two traditional geographical models with a modified geometrical network model where…

Many physical, biological, and social phenomena can be described by cascades taking place on a network. Often, the activity can be empirically observed, but not the underlying network of interactions. In this paper we offer three…

Social and Information Networks · Computer Science 2017-07-24 Sushrut Ghonge , Dervis Can Vural

Transportation networks serve as windows into the complex world of urban systems. By properly characterizing a road network, we can therefore better understand its encompassing urban system. This study offers a geometrical approach towards…

Physics and Society · Physics 2015-07-15 Farideddin Peiravian , Sybil Derrible

Generative neural networks are able to mimic intricate probability distributions such as those of handwritten text, natural images, etc. Since their inception several models were proposed. The most successful of these were based on…

Machine Learning · Computer Science 2024-09-18 Daniel N. Nissani

The unconstrained exponential family of random graphs assumes no prior knowledge of the graph before sampling, but it is natural to consider situations where partial information about the graph is known, for example the total number of…

Probability · Mathematics 2017-04-19 Richard Kenyon , Mei Yin

The random graph of Erdos and Renyi is one of the oldest and best studied models of a network, and possesses the considerable advantage of being exactly solvable for many of its average properties. However, as a model of real-world networks…

Statistical Mechanics · Physics 2007-05-23 M. E. J. Newman

In this paper we present a combinatorial optimisation view on the routing problem for connectionless packet networks by using the metaphor of a landscape. We examine the main properties of the routing landscapes as we define them and how…

Networking and Internet Architecture · Computer Science 2007-05-23 T. Michalareas , L. Sacks

The structure of networks that provide optimal transport properties has been investigated in a variety of contexts. While many different formulations of this problem have been considered, it is recurrently found that optimal networks are…

Biological Physics · Physics 2015-05-13 Francis Corson

The past year saw the introduction of new architectures such as Highway networks and Residual networks which, for the first time, enabled the training of feedforward networks with dozens to hundreds of layers using simple gradient descent.…

Neural and Evolutionary Computing · Computer Science 2017-03-16 Klaus Greff , Rupesh K. Srivastava , Jürgen Schmidhuber

Complex network theory is being widely used to study many real-life systems. One of the fields that can benefit from complex network theory approach is transportation network. In this paper, we briefly review the complex network theory…

Physics and Society · Physics 2023-08-10 Nur Umaisara Rashid , Kar Tim Chan

Pedestrian trajectory prediction is challenging due to its uncertain and multimodal nature. While generative adversarial networks can learn a distribution over future trajectories, they tend to predict out-of-distribution samples when the…

Computer Vision and Pattern Recognition · Computer Science 2021-08-23 Patrick Dendorfer , Sven Elflein , Laura Leal-Taixé

Rapid advances in high-throughput technologies have led to considerable interest in analyzing genome-scale data in the context of biological pathways, with the goal of identifying functional systems that are involved in a given phenotype.…

Quantitative Methods · Quantitative Biology 2015-06-01 Rosemary Braun , Sahil Shah

One of the main characteristics of real-world networks is their large clustering. Clustering is one aspect of a more general but much less studied structural organization of networks, i.e. edge multiplicity, defined as the number of…

Physics and Society · Physics 2012-01-31 Vinko Zlatic , Diego Garlaschelli , Guido Caldarelli

We derive a message passing method for computing the spectra of locally tree-like networks and an approximation to it that allows us to compute closed-form expressions or fast numerical approximates for the spectral density of random graphs…

Physics and Society · Physics 2019-04-19 M. E. J. Newman , Xiao Zhang , Raj Rao Nadakuditi
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