Related papers: The overlap number of a graph
Bipartite graphs model the relationships between two disjoint sets of entities in several applications and are naturally drawn as 2-layer graph drawings. In such drawings, the two sets of entities (vertices) are placed on two parallel lines…
Graphs on integer points of polytopes whose edges come from a set of allowed differences are studied. It is shown that any simple graph can be embedded in that way. The minimal dimension of such a representation is the fiber dimension of…
An effective way to reduce clutter in a graph drawing that has (many) crossings is to group edges that travel in parallel into \emph{bundles}. Each edge can participate in many such bundles. Any crossing in this bundled graph occurs between…
Given a vertex-coloured graph, a dominating set is said to be tropical if every colour of the graph appears at least once in the set. Here, we study minimum tropical dominating sets from structural and algorithmic points of view. First, we…
For a graph $G$, let $cp(G)$ denote the minimum number of cliques of $G$ needed to cover the edges of $G$ exactly once. Similarly, let $bp_k(G)$ denote the minimum number of bicliques (i.e. complete bipartite subgraphs of $G$) needed to…
Scatterplots are a common tool for exploring multidimensional datasets, especially in the form of scatterplot matrices (SPLOMs). However, scatterplots suffer from overplotting when categorical variables are mapped to one or two axes, or the…
Let G be a graph. Consider two nonadjacent vertices x and y that have a common neighbor. Folding G with respect to x and y is the operation which identifies x and y. After a maximal series of foldings the graph is a disjoint union of…
We prove that all $1$-vertex spatial graphs with adequate diagrams have minimal crossing number, and that spatial graph diagrams obtained by replacing vertices and edges of a planar embedded graph by minimal crossing link or spatial graph…
A forcing set for a perfect matching of a graph is defined as a subset of the edges of that perfect matching such that there exists a unique perfect matching containing it. A complete forcing set for a graph is a subset of its edges, such…
We consider shift spaces in which elements of the alphabet may overlap nontransitively. We define a notion of entropy for such spaces, give several techniques for computing lower bounds for it, and show that it is equal to a limit of…
Algorithms for detecting clusters (including overlapping clusters) in graphs have received significant attention in the research community. A closely related important aspect of the problem -- quantification of statistical significance of…
A $k$-matching cover of a graph $G$ is a union of $k$ matchings of $G$ which covers $V(G)$. A matching cover of $G$ is optimal if it consists of the fewest matchings of $G$. In this paper, we present an algorithm for finding an optimal…
We associate all small subgraph counting problems with a systematic graph encoding/representation system which makes a coherent use of graphlet structures. The system can serve as a unified foundation for studying and connecting many…
We view hyper-graphs as incidence graphs, i.e. bipartite graphs with a set of nodes representing vertices and a set of nodes representing hyper-edges, with two nodes being adjacent if the corresponding vertex belongs to the corresponding…
We consider a set of cliques in any multipartite graph with two vertices in each part. Moreover, we construct a class of peculiar polytopes. Key words: multipartite graph, clique, polytope.
Inspired by notorious combinatorial optimization problems on graphs, in this paper we consider a series of related problems defined using a metric space and topology determined by a graph. Particularly, we present the Independent Set,…
Genome assembly is a prominent problem studied in bioinformatics, which computes the source string using a set of its overlapping substrings. Classically, genome assembly uses assembly graphs built using this set of substrings to compute…
Let $G$ be a finite group. A number of graphs with the vertex set $G$ have been studied, including the power graph, enhanced power graph, and commuting graph. These graphs form a hierarchy under the inclusion of edge sets, and it is useful…
Given two weighted k-uniform hypergraphs G, H of order n, how much (or little) can we make them overlap by placing them on the same vertex set? If we place them at random, how concentrated is the distribution of the intersection? The aim of…
We revisit the problem of counting the number of copies of a fixed graph in a random graph or multigraph, including the case of constrained degrees. Our approach relies heavily on analytic combinatorics and on the notion of patchwork to…