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This paper extends the foundational work of Dollma \emph{et al}. on codes for ordered composite DNA sequences. We consider the general setting with an alphabet of size $q$ and a resolution parameter $k$, moving beyond the binary ($q=2$)…

Information Theory · Computer Science 2026-02-19 Zuo Ye , Yuling Li , Zhaojun Lan , Gennian Ge

The central problem in sequence reconstruction is to find the minimum number of distinct channel outputs required to uniquely reconstruct the transmitted sequence. According to Levenshtein's work in 2001, this number is determined by the…

Information Theory · Computer Science 2025-02-14 Wentu Song , Kui Cai , Tony Q. S. Quek

Nearly perfect packing codes are those codes that meet the Johnson upper bound on the size of error-correcting codes. This bound is an improvement to the sphere-packing bound. A related bound for covering codes is known as the van Wee…

Information Theory · Computer Science 2024-10-08 Avital Boruchovsky , Tuvi Etzion , Ron M. Roth

A binary code of blocklength $n$ and codebook size $M$ is called an $(n,M)$ code, which is studied for memoryless binary symmetric channels (BSCs) with the maximum likelihood (ML) decoding. For any $n \geq 2$, some optimal codes among the…

Information Theory · Computer Science 2023-07-06 Yanyan Dong , Shenghao Yang

A $\lambda$-fold $r$-packing (multiple radius-$r$ covering) in a Hamming metric space is a code $C$ such that the radius-$r$ balls centered in $C$ cover each vertex of the space by not more (not less, respectively) than $\lambda$ times. The…

Discrete Mathematics · Computer Science 2021-05-25 Denis S. Krotov , Vladimir N. Potapov

In this work, we introduce convolutional codes for network-error correction in the context of coherent network coding. We give a construction of convolutional codes that correct a given set of error patterns, as long as consecutive errors…

Information Theory · Computer Science 2009-08-06 K. Prasad , B. Sundar Rajan

In this work, we consider the list-decodability and list-recoverability of codes in the zero-rate regime. Briefly, a code $\mathcal{C} \subseteq [q]^n$ is $(p,\ell,L)$-list-recoverable if for all tuples of input lists $(Y_1,\dots,Y_n)$ with…

Information Theory · Computer Science 2023-09-06 Nicolas Resch , Chen Yuan , Yihan Zhang

In this work, we investigate the problem of constructing codes capable of correcting two deletions. In particular, we construct a code that requires redundancy approximately 8 log n + O(log log n) bits of redundancy, where n is the length…

Information Theory · Computer Science 2018-05-02 Ryan Gabrys , Frederic Sala

We show an interesting PBD-closure result for the set of lengths of constant-composition codes whose distance and size meet certain conditions. A consequence of this PBD-closure result is that the size of optimal constant-composition codes…

Information Theory · Computer Science 2007-12-18 Yeow Meng Chee , Alan C. H. Ling , San Ling , Hao Shen

We construct constant-sized ensembles of linear error-correcting codes over any fixed alphabet that can correct a given fraction of adversarial erasures at rates approaching the Singleton bound arbitrarily closely. We provide several…

Information Theory · Computer Science 2025-04-07 Yeyuan Chen , Mahdi Cheraghchi , Nikhil Shagrithaya

Locally repairable codes which are optimal with respect to the bound presented by Prakash et al. are considered. New upper bounds on the length of such optimal codes are derived. The new bounds both improve and generalize previously known…

Information Theory · Computer Science 2019-04-10 Han Cai , Ying Miao , Moshe Schwartz , Xiaohu Tang

The length function $\ell_q(r,R)$ is the smallest length of a $q$-ary linear code of codimension (redundancy) $r$ and covering radius $R$. The $d$-length function $\ell_q(r,R,d)$ is the smallest length of a $q$-ary linear code with…

Information Theory · Computer Science 2020-06-16 Daniele Bartoli , Alexander A. Davydov , Stefano Marcugini , Fernanda Pambianco

In this paper, we present an explicit construction of list-decodable codes for single-deletion and single-substitution with list size two and redundancy 3log n+4, where n is the block length of the code. Our construction has lower…

Information Theory · Computer Science 2022-01-27 Wentu Song , Kui Cai , Tuan Thanh Nguyen

In 1968, Golomb and Welch conjectured that there is no perfect Lee codes with radius $r\ge2$ and dimension $n\ge3$. A diameter perfect code is a natural generalization of the perfect code. In 2011, Etzion (IEEE Trans. Inform. Theory,…

Combinatorics · Mathematics 2022-12-26 Tao Zhang , Gennian Ge

A construction of 2-quasi-perfect Lee codes is given over the space $\mathbb Z_p^n$ for $p$ prime, $p\equiv \pm 5\pmod{12}$ and $n=2[\frac{p}{4}]$. It is known that there are infinitely many such primes. Golomb and Welch conjectured that…

Information Theory · Computer Science 2017-06-26 Cristóbal Camarero , Carmen Martínez

We first give a construction of binary $t_1$-deletion-$t_2$-insertion-burst correcting codes with redundancy at most $\log(n)+(t_1-t_2-1)\log\log(n)+O(1)$, where $t_1\ge 2t_2$. Then we give an improved construction of binary codes capable…

Information Theory · Computer Science 2022-11-23 Zuo Ye , Ohad Elishco

The minimum distance graph of a code has the codewords as vertices and edges exactly when the Hamming distance between two codewords equals the minimum distance of the code. A constructive proof for reconstructibility of an extended perfect…

Information Theory · Computer Science 2009-05-31 Ivan Yu. Mogilnykh , Patric R. J. Östergård , Olli Pottonen , Faina I. Solov'eva

We study the problem of existence of (nontrivial) perfect codes in the discrete $ n $-simplex $ \Delta_{\ell}^n := \left\{ \begin{pmatrix} x_0, \ldots, x_n \end{pmatrix} : x_i \in \mathbb{Z}_{+}, \sum_i x_i = \ell \right\} $ under $ \ell_1…

Information Theory · Computer Science 2020-08-13 Mladen Kovačević , Dejan Vukobratović

We give a complete determination of the exact optimal worst-case repair bandwidth and repair I/O for linear exact repair of $(n,n-2,2)$ MDS array codes over every finite field $\mathbb{F}_q$ and for every admissible code length $3\le n\le…

Information Theory · Computer Science 2026-05-12 Huawei Wu

In this paper, we investigate the problem of designing $(n, N; \mathcal{B})$-reconstruction codes for $N\in \{14,11,9,5\}$, where $\mathcal{B}$ is the single-deletion single-substitution ball function that maps a sequence to the set of all…

Information Theory · Computer Science 2026-04-29 Yuling Li , Yubo Sun , Gennian Ge