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Theoretical results regarding two-dimensional ordinary-differential equations (ODEs) with second-degree polynomial right-hand sides are summarized, with an emphasis on limit cycles, limit cycle bifurcations and multistability. The results…

Molecular Networks · Quantitative Biology 2017-05-30 Tomislav Plesa , Tomas Vejchodsky , Radek Erban

We give general topological rules which very accurately predict the chemical trends in glass transition temperature $T_g$ variation as a function of cross-linking. In multicomponent glasses, these chemical trends permit to distinguish…

Disordered Systems and Neural Networks · Physics 2009-10-31 Matthieu Micoulaut , Gerardo G. Naumis

Biochemical processes typically involve huge numbers of individual reversible steps, each with its own dynamical rate constants. For example, kinetic proofreading processes rely upon numerous sequential reactions in order to guarantee the…

Molecular Networks · Quantitative Biology 2009-12-28 Golan Bel , Brian Munsky , Ilya Nemenman

We obtain exact analytic expressions for a class of functions expressed as integrals over the Haar measure of the unitary group in d dimensions. Based on these general mathematical results, we investigate generic dynamical properties of…

Quantum Physics · Physics 2013-04-30 Manuel Gessner , Heinz-Peter Breuer

We derive a thermodynamic uncertainty relation for general open quantum dynamics, described by a joint unitary evolution on a composite system comprising a system and an environment. By measuring the environmental state after the…

Statistical Mechanics · Physics 2021-01-06 Yoshihiko Hasegawa

The current understanding of finite temperature phase transitions in QCD is reviewed. A critical discussion of refined phase transition criteria in numerical lattice simulations and of analytical tools going beyond the mean-field level in…

High Energy Physics - Lattice · Physics 2008-11-26 Hildegard Meyer-Ortmanns

We present a systematic theory of chemically active emulsions in the hydrodynamic limit by constructing a thermodynamically consistent framework in which the equilibrium is broken by chemo-stating of fuel molecules. For ternary solutions…

Soft Condensed Matter · Physics 2026-04-21 Efe Ilker , Kathrin Laxhuber , Jean-Francois Joanny , Frank Jülicher

The adoption of detailed mechanisms for chemical kinetics often poses two types of severe challenges: First, the number of degrees of freedom is large; and second, the dynamics is characterized by widely disparate time scales. As a result,…

Dynamical Systems · Mathematics 2025-10-01 Eliodoro Chiavazzo , C. William Gear , Carmeline J. Dsilva , Neta Rabin , Ioannis G. Kevrekidis

We summarize and to discuss briefly the geometrical practice of modeling attitudes so far popular in treating reaction kinetics of solid-state processes. The model equations existing in the literature have been explored to describe the…

Chemical Physics · Physics 2015-10-09 I. Avramov , J. Šesták

This study addresses a longstanding question regarding the mathematical proof of chaotic behavior in kinetic differential equations. Following the numerous numerical and experimental results in the past 50 years, we introduce two formal…

Statistical Mechanics · Physics 2024-03-05 M. Susits , J. Tóth

Quantum thermodynamics is a powerful theoretical tool for assessing the suitability of quantum materials as platforms for novel technologies. In particular, the modeling of quantum cycles allows us to investigate the heat changes and work…

Quantum Physics · Physics 2024-11-20 Vinicius Gomes de Paula , Wanisson S. Santana , Clebson Cruz , Mario Reis

We investigate the heterogeneous dynamics in a model, where chemical gelation and glass transition interplay, focusing on the dynamical susceptibility. Two independent mechanisms give raise to the correlations, which are manifested in the…

Soft Condensed Matter · Physics 2017-05-09 Antonio de Candia , Annalisa Fierro , Raffaele Pastore , Massimo Pica Ciamarra , Antonio Coniglio

All current formulations of nonequilibrium thermodynamics of open chemical reaction networks rely on the assumption of non-interacting species. We develop a general theory which accounts for interactions between chemical species within a…

Statistical Mechanics · Physics 2021-03-09 Francesco Avanzini , Emanuele Penocchio , Gianmaria Falasco , Massimiliano Esposito

Motivated by the dynamics of micro-scale oscillators with thermo-optical feedback, a simplified third order model, capturing the key features of these oscillators is developed, where each oscillator consists of a displacement variable…

Chaotic Dynamics · Physics 2022-04-26 Richard H. Rand , Alan T. Zehnder , B. Shayak , Aditya Bhaskar

We address a fundamental question: under which conditions do the dynamics and thermodynamics of open chemical reaction networks (CRNs), grounded on the notion of idealized chemostats that exchange selected species, emerge from underlying…

Statistical Mechanics · Physics 2026-04-17 Benedikt Remlein , Massimiliano Esposito , Francesco Avanzini

Synthesis remains a challenge for advancing materials science. A key focus of this challenge is how to enable selective synthesis, particularly as it pertains to metastable materials. This perspective addresses the question: how can…

Materials Science · Physics 2023-06-14 James R Neilson , Matthew J McDermott , Kristin A Persson

In this review, we present some advanced algorithms and programs used in our scientific school with short description of types of astrophysical systems, which we study. However, we discuss mainly mathematical methods, which may be applied…

Instrumentation and Methods for Astrophysics · Physics 2020-11-11 Ivan L. Andronov , Vitalii V. Breus , Larysa S. Kudashkina

Predictions of relative stabilities of (competing) molecular crystals are of great technological relevance, most notably for the pharmaceutical industry. However, they present a long-standing challenge for modeling, as often minuscule free…

Materials Science · Physics 2022-05-25 Venkat Kapil , Edgar A Engel

We consider growing open chemical reaction systems (CRSs), in which autocatalytic chemical reactions are encapsulated in a finite volume and its size can change in conjunction with the reactions. The thermodynamics of growing CRSs is…

Statistical Mechanics · Physics 2022-08-30 Yuki Sughiyama , Atsushi Kamimura , Dimitri Loutchko , Tetsuya J. Kobayashi

The control of chemical reactions is a recurring theme in physics and chemistry. Traditionally, chemical reactions have been investigated by tuning thermodynamic parameters, such as temperature or pressure. More recently, physical methods…

Atomic Physics · Physics 2012-09-28 Lothar Ratschbacher , Christoph Zipkes , Carlo Sias , Michael Köhl