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The immersed boundary method is a numerical and mathematical formulation for solving fluid-structure interaction problems. It relies on solving fluid equations on an Eulerian fluid grid and interpolating the resulting velocity back onto…

Numerical Analysis · Mathematics 2020-03-19 Ondrej Maxian , Charles S. Peskin

Flows in porous media in the low Reynolds number regime are often modeled by the Brinkman equations. Analytical solutions to these equations are limited to standard geometries. Finite volume or element schemes can be used in more…

Fluid Dynamics · Physics 2021-10-13 Suraj Kumar Kamarapu , Mehdi Jabbarzadeh , Henry Chien Fu

We introduce a new regularized interface method for proving existence of weak solutions to nonlinear moving boundary problems with low-regularity interfaces. We study a fluid-poroelastic structure interaction (FPSI) problem coupling the…

Analysis of PDEs · Mathematics 2025-08-26 Jeffrey Kuan , Sunčica Čanić , Boris Muha

Cilia and flagella are actively bending slender organelles, performing functions such as motility, feeding and embryonic symmetry breaking. We review the mechanics of viscous-dominated microscale flow, including time-reversal symmetry, drag…

Quantitative Methods · Quantitative Biology 2013-09-06 Thomas D. Montenegro-Johnson , Andrew A. Smith , David J. Smith , Daniel Loghin , John R. Blake

A finite element methodology for large classes of variational boundary value problems is defined which involves discretizing two linear operators: (1) the differential operator defining the spatial boundary value problem; and (2) a Riesz…

Numerical Analysis · Mathematics 2017-12-08 Brendan Keith , Socratis Petrides , Federico Fuentes , Leszek Demkowicz

The bundling of flagella is known to create a "run" phase, where the bacteria moves in a nearly straight line rather than making changes in direction. Historically, mechanical explanations for the bundling phenomenon intrigued many…

Robotics · Computer Science 2023-10-17 Sangmin Lim , Achyuta Yadunandan , Mohammad Khalid Jawed

In the following work we apply the boundary element method to two-phase flows in shallow microchannels, where one phase is dispersed and does not wet the channel walls. These kinds of flows are often encountered in microfluidic…

Fluid Dynamics · Physics 2014-12-09 Mathias Nagel , François Gallaire

We consider a surface Stokes problem in stream function formulation on a simply connected oriented surface $\Gamma \subset \mathbb{R}^3$ without boundary. This formulation leads to a coupled system of two second order scalar surface partial…

Numerical Analysis · Mathematics 2019-10-22 Philip Brandner , Arnold Reusken

In this work, we investigate a nonconforming finite element approximation of phase-field parameterized topology optimization governed by the Stokes flow. The phase field, the velocity field and the pressure field are approximated by…

Numerical Analysis · Mathematics 2025-12-09 Bangti Jin , Jing Li , Yifeng Xu , Shengfeng Zhu

An explicit moving boundary method for the numerical solution of time-dependent hyperbolic conservation laws on grids produced by the intersection of complex geometries with a regular Cartesian grid is presented. As it employs directional…

Fluid Dynamics · Physics 2018-05-23 W. P. Bennett , N. Nikiforakis , R. Klein

The tractions that cells exert on a gel substrate from the observed displacements is an increasingly attractive and valuable information in biomedical experiments. The computation of these tractions requires in general the solution of an…

Computational Physics · Physics 2016-08-30 Jose J Munoz

A linear stability analysis of an elastic surface immersed in a viscous fluid is presented. The coupled system is modeled using the method of regularized Stokeslets (MRS), a Lagrangian method for simulating fluid-structure interaction at…

Fluid Dynamics · Physics 2025-07-10 Dana Ferranti , Sarah D. Olson

We present a numerical method for computing the single layer (Stokeslet) and double layer (stresslet) integrals in Stokes flow. The method applies to smooth, closed surfaces in three dimensions, and achieves high accuracy both on and near…

Numerical Analysis · Mathematics 2019-03-22 Svetlana Tlupova , J. Thomas Beale

We study the microscale propulsion of a rotating helical filament confined by a cylindrical tube, using a boundary-element method for Stokes flow that accounts for helical symmetry. We determine the effect of confinement on swimming speed…

Fluid Dynamics · Physics 2014-01-09 Bin Liu , Kenneth S. Breuer , Thomas R. Powers

The Boundary Element Method (BEM) is a powerful numerical approach for solving 3D elastostatic problems, particularly useful for crack propagation in fracture mechanics and half-space problems. A key challenge in BEM lies in handling…

Numerical Analysis · Mathematics 2025-10-30 Vibudha Lakshmi Keshava , Martin Schanz

We remark on the use of regularized Stokeslets in the slender body theory (SBT) approximation of Stokes flow about a thin fiber of radius $\epsilon>0$. Denoting the regularization parameter by $\delta$, we consider regularized SBT based on…

Fluid Dynamics · Physics 2021-06-16 Laurel Ohm

The conventional no-slip boundary condition leads to a non-integrable stress singularity at a moving contact line. This makes numerical simulations challenging, especially when capillary effects are essential for the dynamics of the flow.…

Fluid Dynamics · Physics 2017-09-18 Hanna Holmgren , Gunilla Kreiss

This work presents a numerical study of the Dirichlet problem for the fractional Laplacian $(-\Delta)^s$ with $s\in(0,1)$ using Finite Element methods with non-standard bases. Classical approaches based on piece-wise linear basis yield…

Numerical Analysis · Mathematics 2025-11-19 Félix del Teso , Stefano Fronzoni , David Gómez-Castro

We consider a vector-Laplace problem posed on a 2D surface embedded in a 3D domain, which results from the modeling of surface fluids based on exterior Cartesian differential operators. The main topic of this paper is the development and…

Numerical Analysis · Mathematics 2017-09-05 Sven Groß , Thomas Jankuhn , Maxim A. Olshanskii , Arnold Reusken

Confinement and wall effects are known to affect the kinematics and propulsive characteristics of swimming microorganisms. When a solid body is dragged through a viscous fluid at constant velocity, the presence of a wall increases fluid…

Biological Physics · Physics 2010-10-29 Arthur A. Evans , Eric Lauga