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Many imaging techniques for biological systems -- like fixation of cells coupled with fluorescence microscopy -- provide sharp spatial resolution in reporting locations of individuals at a single moment in time but also destroy the dynamics…

Subcellular Processes · Quantitative Biology 2024-05-15 Christopher E. Miles , Scott A. McKinley , Fangyuan Ding , Richard B. Lehoucq

A stochastic model for intermittent fluctuations due to a super-position of uncorrelated Lorentzian pulses is presented. For constant pulse duration, this is shown to result in an exponential power spectral density for the stationary…

Plasma Physics · Physics 2017-03-08 O. E. Garcia , A. Theodorsen

For a population with any given number of types, we construct a new multivariate Moran process with frequency-dependent selection and establish, analytically, a correspondence to equilibrium Lotka-Volterra phenomenology. This…

Populations and Evolution · Quantitative Biology 2015-05-30 Andrew E. Noble , Alan Hastings , William F. Fagan

Precise estimation of the atomic resonance frequency is fundamental for the characterization and control of quantum systems. The resonance experiment is a standard method for this measurement, wherein the drive field frequency is swept to…

Quantum Physics · Physics 2025-05-14 Tharon Holdsworth , Jacob Adamczyk , Girish S. Agarwal

The goal of this paper is to develop a theory of graphon-valued stochastic processes, and to construct and analyse a natural class of such processes arising from population genetics. We consider finite populations where individuals change…

Probability · Mathematics 2019-08-20 Siva Athreya , Frank den Hollander , Adrian Röllin

A fundamental problem in the fields of population genetics, evolution, and community ecology, is the fate of a single mutant, or invader, introduced in a finite population of wild types. For a fixed-size community of $N$ individuals, with…

Populations and Evolution · Quantitative Biology 2017-10-25 Matan Danino , Nadav M. Shnerb

Resistive switching is one of the foremost candidates for building novel types of non-volatile random access memories. Any practical implementation of such a memory cell calls for a strong miniaturization, at which point fluctuations start…

Materials Science · Physics 2017-10-11 Paul K. Radtke , Andrew L. Hazel , Arthur V. Straube , Lutz Schimansky-Geier

We consider a reaction-diffusion model for a population structured in phenotype. We assume that the population lives in a heterogeneous periodic environment, so that a given phenotypic trait may be more or less fit according to the spatial…

Analysis of PDEs · Mathematics 2025-03-07 Nathanaël Boutillon , Luca Rossi

Coherent optical manipulation of electronic bandstructures via Floquet Engineering is a promising means to control quantum systems on an ultrafast timescale. However, the ultrafast switching on/off of the driving field comes with questions…

Population rate or activity equations are the foundation of a common approach to modeling for neural networks. These equations provide mean field dynamics for the firing rate or activity of neurons within a network given some connectivity.…

Neurons and Cognition · Quantitative Biology 2009-05-15 Michael A. Buice , Jack D. Cowan , Carson C. Chow

Using a circuit QED device, we demonstrate a simple qubit measurement pulse shape that yields fast ring-up and ring-down of the readout resonator regardless of the qubit state. The pulse differs from a square pulse only by the inclusion of…

Quantum Physics · Physics 2016-02-03 D. T. McClure , Hanhee Paik , L. S. Bishop , M. Steffen , Jerry M. Chow , Jay M. Gambetta

The Kuramoto model has been introduced to describe synchronization phenomena observed in groups of cells, individuals, circuits, etc. The model consists of $N$ interacting oscillators on the one dimensional sphere $\mathbf{S}^{1}$, driven…

Probability · Mathematics 2013-01-29 Eric Luçon

We investigate a class of periodically driven many-body systems that allows us to extend the phenomenon of prethermalization to the vicinity of isolated intermediate-to-low drive frequencies away from the high-frequency limit. We provide…

Statistical Mechanics · Physics 2021-05-05 Christoph Fleckenstein , Marin Bukov

To coherently control a few-level quantum emitter, typically pulses with an energy resonant to the transition energy are applied making use of the Rabi mechanism, while a single off-resonant pulse does not result in a population inversion.…

We study the approach to the adiabatic limit in periodically driven systems. Specifically focusing on a spin-1/2 in a magnetic field we find that, when the parameters of the Hamiltonian lead to a quasi-degeneracy in the Floquet spectrum,…

Quantum Physics · Physics 2017-10-18 Angelo Russomanno , Giuseppe E. Santoro

As a paradigmatic model of open quantum system, the spin-boson model is widely used in theoretical and experimental investigations. Beyond the weak coupling limit, the spin dynamics can be described by a time-nonlocal generalized master…

Statistical Mechanics · Physics 2018-08-10 L. Magazzù , S. Denisov , P. Hänggi

We consider incoherent excitation of multilevel quantum systems, e.g. molecules with multiple vibronic states. We show that (1) the geometric constraints of the matter-field coupling operator guarantee that noise-induced coherences will be…

Quantum Physics · Physics 2023-10-02 Amro Dodin , Timur V. Tscherbul , Paul Brumer

Since steep declines in a population's size also typically alter its composition, population bottlenecks are considered highly important for evolution. However, despite such significance, the mechanisms governing the impact of a given…

Populations and Evolution · Quantitative Biology 2022-06-28 Emanuele Crosato , Jeffrey N. Philippson , Shashi Thutupalli , Richard G. Morris

We study the population profile in a simple discrete time model of population dynamics. Our model, which is closely related to certain ``bit-string'' models of evolution, incorporates competition for resources via a population dependent…

Statistical Mechanics · Physics 2009-10-31 Martin Howard , R. K. P. Zia

Population dynamics reflects an underlying birth-death process, where the rates associated with different events may depend on external environmental conditions and on the population density. A whole family of simple and popular…

Populations and Evolution · Quantitative Biology 2019-07-03 Yitzhak Yahalom , Bnaya Steinmetz , Nadav M. Shnerb