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We develop a kinetic reaction model for cells having irradiated DNA molecules due to ionizing radiation exposure. Our theory simultaneously accounts for the time-dependent reactions of the DNA damage, the DNA mutation, the DNA repair, and…

Biological Physics · Physics 2015-06-18 Yuichiro Manabe , Issei Nakamura , Masako Bando

Theoretical frameworks used to qualitatively and quantitatively describe nuclear dynamics in solids are often based on the harmonic approximation. However, this approximation is known to become inaccurate or to break down completely in many…

Materials Science · Physics 2020-09-02 Florian Knoop , Thomas A. R. Purcell , Matthias Scheffler , Christian Carbogno

Large time dynamics of reaction-diffusion systems modeling some irreversible reaction networks are investigated. Depending on initial masses, these networks possibly possess boundary equilibria, where some of the chemical concentrations are…

Analysis of PDEs · Mathematics 2024-11-04 Thi Lien Nguyen , Bao Quoc Tang

Reaction currents in chemical networks usually increase when increasing their driving affinities. But far from equilibrium the opposite can also happen. We find that such negative differential response (NDR) occurs in reaction schemes of…

Statistical Mechanics · Physics 2019-07-24 Gianmaria Falasco , Tommaso Cossetto , Emanuele Penocchio , Massimiliano Esposito

Lattice anharmonicity is thought to strongly affect vacancy concentrations in metals at high temperatures. It is however non-trivial to account for this effect directly using density functional theory (DFT). Here we develop a deep neural…

Materials Science · Physics 2019-10-02 Anton S. Bochkarev , Ambroise van Roekeghem , Stefano Mossa , Natalio Mingo

A hypothesis on the physical mechanism generating the heartbeat instability in complex (dusty) plasmas is presented. It is suggested that the instability occurs due to the periodically repeated critical transformation on the boundary…

The primary emphasis of this work on kinetics is to illustrate the a posteriori approach to applications, where focus on data leads to novel outcomes, rather than the a priori tendencies of applied analysis which imposes constructs on the…

General Physics · Physics 2011-01-27 Christopher G. Jesudason

The mechanical response of solids depends on temperature because the way atoms and molecules respond collectively to deformation is affected at various levels by thermal motion. This is a fundamental problem of solid state science and plays…

Soft Condensed Matter · Physics 2015-06-12 Alessio Zaccone , Eugene M. Terentjev

It is demonstrated that a straightforward extension of the Arrhenius law accurately describes diffusion in the thermodynamically stable liquid of hard spheres. A sharp negative deviation from this behaviour is observed as the liquid is…

Statistical Mechanics · Physics 2009-11-07 M. Dzugutov

For free particles in a simple harmonic potential plus a weak anharmonicity, characterized by a set of anharmonic parameters, Newtonian mechanics asserts that there is a renormalization of the natural frequency of the periodic motion; and…

Statistical Mechanics · Physics 2023-07-04 Y. T. Liu , Y. H. Zhao , Y. Zhong , J. M. Shen , J. H. Zhang , Q. H. Liu

This review focuses on nuclear reactions in astrophysics and, more specifically, on reactions with light ions (nucleons and alpha particles) proceeding via the strong interaction. It is intended to present the basic definitions essential…

Nuclear Theory · Physics 2015-03-17 T. Rauscher

A density functional for the lattice gas (Ising model) from fundamental measure theory is applied to the problem of droplet states in three-dimensional, finite systems. Similar to previous simulation studies, the sequence of droplets…

Statistical Mechanics · Physics 2021-09-29 Manuel Maeritz , Martin Oettel

A kinetic description of lattice-gas automaton models for reaction-diffusion systems is presented. It provides corrections to the mean-field rate equations in the diffusion-limited regime. When applied to the two-species Maginu model, the…

Chemical Physics · Physics 2009-10-30 H. J. Bussemaker , R. Brito

A theory of vibrational excitations based on power-law spatial correlations in the elastic constants (or equivalently in the internal stress) is derived, in order to determine the vibrational density of states $D(\omega)$ of disordered…

Disordered Systems and Neural Networks · Physics 2020-11-30 Bingyu Cui , Alessio Zaccone

Theoretical reaction rates in the temperature range 0.01*10^9<=T[K]<=10.*10^9 are calculated in the statistical model (Hauser-Feshbach formalism) for targets with 10<=Z<=83 (Ne to Bi) and for a mass range reaching the neutron and proton…

Astrophysics · Physics 2009-10-31 T. Rauscher , F. -K. Thielemann

We consider an isolated point defect embedded in a homogeneous crystalline solid. We show that, in the harmonic approximation, a periodic supercell approximation of the formation free energy as well as of the transition rate between two…

Probability · Mathematics 2018-12-11 Julian Braun , Manh Hong Duong , Christoph Ortner

We identify a possible mechanism of the plasmon instabilities in periodically gated two-dimensional electron systems with a modulated electron density (plasmonic crystals) under direct current. The instability occurs due to the amplified…

Mesoscale and Nanoscale Physics · Physics 2017-01-06 Aleksandr S. Petrov , Dmitry Svintsov , Victor Ryzhii , Michael S. Shur

We present a general expression for the association rate for partially diffusion-controlled reactions between spherical molecules with an asymmetric reactive patch on each surface. Reaction can occur only if the two patches are in contact…

Chemical Physics · Physics 2007-05-23 Maximilian Schlosshauer , David Baker

Chemical master equation plays an important role to describe the time evolution of homogeneous chemical system. In addition to the reaction process, it is also accompanied by physical diffusion of the reactants in complex system that is…

Chemical Physics · Physics 2025-03-06 Hong Zhang , Guohua Li

In many biological situations, a species arriving from a remote source diffuses in a domain confined between two parallel surfaces until it finds a binding partner. Since such a geometric shape falls in between two- and three-dimensional…

Chemical Physics · Physics 2019-11-05 Denis S. Grebenkov , Diego Krapf
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