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Related papers: Formal Verification of Self-Assembling Systems

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The increasing use of model-based tools enables further use of formal verification techniques in the context of distributed real-time systems. To avoid state explosion, it is necessary to construct verification models that focus on the…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-18 Chih-Hong Cheng , Christian Buckl , Javier Esparza , Alois Knoll

In this paper, we investigate shape-assembling power of a tile-based model of self-assembly called the Signal-Passing Tile Assembly Model (STAM). In this model, the glues that bind tiles together can be turned on and off by the binding…

Formal Languages and Automata Theory · Computer Science 2022-06-09 Andrew Alseth , Daniel Hader , Matthew J. Patitz

Model checking and automated theorem proving are two pillars of formal methods. This paper investigates model checking from an automated theorem proving perspective, aiming at combining the expressiveness of automated theorem proving and…

Logic in Computer Science · Computer Science 2017-10-03 Ying Jiang , Jian Liu , Gilles Dowek , Kailiang Ji

In the self-assembly process which drives the formation of cellular membranes, micelles, and capsids, a collection of separated subunits spontaneously binds together to form functional and more ordered structures. In this work, we study the…

Biological Physics · Physics 2021-05-04 Mobolaji Williams

This article introduces a fully automated verification technique that permits to analyze real-time systems described using a continuous notion of time and a mixture of operational (i.e., automata-based) and descriptive (i.e., logic-based)…

Logic in Computer Science · Computer Science 2013-08-14 Carlo A. Furia , Matteo Pradella , Matteo Rossi

We introduce a new model of algorithmic tile self-assembly called size-dependent assembly. In previous models, supertiles are stable when the total strength of the bonds between any two halves exceeds some constant temperature. In this…

Computational Geometry · Computer Science 2015-09-24 Sándor P. Fekete , Robert T. Schweller , Andrew Winslow

In this paper we investigate the computational power of the polygonal tile assembly model (polygonal TAM) at temperature 1, i.e. in non-cooperative systems. The polygonal TAM is an extension of Winfree's abstract tile assembly model (aTAM)…

Computational Geometry · Computer Science 2015-08-20 Oscar Gilbert , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

In this paper, we investigate the abilities of systems of self-assembling tiles which can each pass a constant number of signals to their immediate neighbors to create replicas of input shapes. Namely, we work within the Signal-passing Tile…

Emerging Technologies · Computer Science 2022-04-05 Andrew Alseth , Jacob Hendricks , Matthew J. Patitz , Trent A. Rogers

Recent studies have demonstrated that test-time compute scaling effectively improves the performance of small language models (sLMs). However, prior research has mainly examined test-time compute scaling with an additional larger model as a…

Computation and Language · Computer Science 2025-04-08 Minki Kang , Jongwon Jeong , Jaewoong Cho

Virtually all verification techniques using formal methods rely on the availability of a formal specification, which describes the design requirements precisely. However, formulating specifications remains a manual task that is notoriously…

Formal Languages and Automata Theory · Computer Science 2025-01-28 Daniel Neider , Rajarshi Roy

Diffusion Multi-modal Large Language Models (dMLLMs) have recently emerged as a novel architecture unifying image generation and understanding. However, developing effective and efficient Test-Time Scaling (TTS) methods to unlock their full…

Computer Vision and Pattern Recognition · Computer Science 2026-04-09 Yi Xin , Siqi Luo , Tianxiang Xu , Qi Qin , Haoxing Chen , Kaiwen Zhu , Zhiwei Zhang , Yangfan He , Rongchao Zhang , Jinbin Bai , Shuo Cao , Bin Fu , Junjun He , Yihao Liu , Yuewen Cao , Xiaohong Liu

Large language models (LLMs) have demonstrated significant potential in formal theorem proving, yet state-of-the-art performance often necessitates prohibitive test-time compute via massive roll-outs or extended context windows. In this…

Machine Learning · Computer Science 2026-04-22 Guchan Li , Rui Tian , Hongning Wang

We develop a sound, complete and practically implementable tableaux-based decision method for constructive satisfiability testing and model synthesis in the fragment ATL+ of the full Alternating time temporal logic ATL*. The method extends…

Logic in Computer Science · Computer Science 2015-05-28 Serenella Cerrito , Amélie David , Valentin Goranko

Temporal logic is a very powerful formalism deeply investigated and used in formal system design and verification. Its application usually reduces to solving specific decision problems such as model checking and satisfiability. In these…

Logic in Computer Science · Computer Science 2016-09-15 Gaëlle Fontaine , Fabio Mogavero , Aniello Murano , Giuseppe Perelli , Loredana Sorrentino

Recently there has been a great attention from the scientific community towards the use of the model-checking technique as a tool for test generation in the simulation field. This paper aims to provide a useful mean to get more insights…

Logic in Computer Science · Computer Science 2011-11-14 Margherita Napoli , Mimmo Parente

I consider the following generic scenario: an abstract model M of some 'real' system is only partially presented, or partially known to us, and we have to ensure that the actual system satisfies a given specification, formalised in some…

Logic in Computer Science · Computer Science 2020-12-24 Valentin Goranko

DNA Self-Assembly has emerged as an interdisciplinary field with many intriguing applications such DNA bio-sensor, DNA circuits, DNA storage, drug delivery etc. Tile assembly model of DNA has been studied for various computational…

Emerging Technologies · Computer Science 2015-02-20 Shalin Shah , Parth Dave , Manish K Gupta

Self-assembly is ubiquitous in nature, particularly in biology, where it underlies the formation of protein quaternary structure and protein aggregation. Quaternary structure assembles deterministically and performs a wide range of…

Emerging Technologies · Computer Science 2016-04-27 S. Tesoro , S. E. Ahnert

We introduce a machine learning approach to model checking temporal logic, with application to formal hardware verification. Model checking answers the question of whether every execution of a given system satisfies a desired temporal logic…

Logic in Computer Science · Computer Science 2024-11-01 Mirco Giacobbe , Daniel Kroening , Abhinandan Pal , Michael Tautschnig

The Tile Automata (TA) model describes self-assembly systems in which monomers can build structures and transition with an adjacent monomer to change their states. This paper shows that seeded TA is a non-committal intrinsically universal…

Cellular Automata and Lattice Gases · Physics 2024-07-17 Tim Gomez , Elise Grizzell , Asher Haun , Ryan Knobel , Tom Peters , Robert Schweller , Tim Wylie