Related papers: Heapable Sequences and Subsequences
The longest common subsequence (LCS) is a fundamental problem in string processing which has numerous algorithmic studies, extensions, and applications. A sequence $u_1, \ldots, u_f$ of $f$ strings s said to be an ($f$-)segmentation of a…
The problem of ranking can be described as follows. We have a set of combinatorial objects $S$, such as, say, the k-subsets of n things, and we can imagine that they have been arranged in some list, say lexicographically, and we want to…
We show that Closest Substring, one of the most important problems in the field of biological sequence analysis, is W[1]-hard when parameterized by the number k of input strings (and remains so, even over a binary alphabet). This problem is…
We introduce the notion of a reproducible algorithm in the context of learning. A reproducible learning algorithm is resilient to variations in its samples -- with high probability, it returns the exact same output when run on two samples…
Online algorithms process their inputs piece by piece, taking irrevocable decisions for each data item. This model is too restrictive for most partitioning problems, since data that is yet to arrive may render it impossible to extend…
This paper describes a new and purely functional implementation technique of binary heaps. A binary heap is a tree-based data structure that implements priority queue operations (insert, remove, minimum/maximum) and guarantees at worst…
Algorithms to find optimal alignments among strings, or to find a parsimonious summary of a collection of strings, are well studied in a variety of contexts, addressing a wide range of interesting applications. In this paper, we consider…
This paper reformulates the problem of finding a longest common increasing subsequence of the two given input sequences in a very succinct way. An extremely simple linear space algorithm based on the new formula can find a longest common…
The Longest Common Subsequence (LCS) problem is a very important problem in math- ematics, which has a broad application in scheduling problems, physics and bioinformatics. It is known that the given two random sequences of infinite…
The main subject of the paper is everywhere complex sequences. An everywhere complex sequence is a sequence that does not contain substrings of Kolmogorov complexity less than $\alpha n-O(1)$ where $n$ is the length of substring and…
We present algorithms for length-constrained maximum sum segment and maximum density segment problems, in particular, and the problem of finding length-constrained heaviest segments, in general, for a sequence of real numbers. Given a…
The segment tree is an extremely versatile data structure. In this paper, a new heap based implementation of segment trees is proposed. In such an implementation of segment tree, the structural information associated with the tree nodes can…
A length-$n$ random sequence $X_1,\ldots,X_n$ in a space $S$ is finitely exchangeable if its distribution is invariant under all $n!$ permutations of coordinates. Given $N > n$, we study the extendibility problem: when is it the case that…
Let $n$ denote the number of elements currently in a data structure. An in-place heap is stored in the first $n$ locations of an array, uses $O(1)$ extra space, and supports the operations: minimum, insert, and extract-min. We introduce an…
In continual learning, understanding the properties of task sequences and their relationships to model performance is important for developing advanced algorithms with better accuracy. However, efforts in this direction remain…
The problem of reconstructing a sequence of independent and identically distributed symbols from a set of equal size, consecutive, fragments, as well as a dependent reference sequence, is considered. First, in the regime in which the…
We introduce a new class of problems lying halfway between questions about graph capacity and intersection. We say that two binary sequences x and y of the same length have a skewincidence if there is a coordinate i for which x_i=y_{i+1}=1…
Given a sequence $S$ of length $n$, a letter-duplicated subsequence is a subsequence of $S$ in the form of $x_1^{d_1}x_2^{d_2}\cdots x_k^{d_k}$ with $x_i\in\Sigma$, $x_j\neq x_{j+1}$ and $d_i\geq 2$ for all $i$ in $[k]$ and $j$ in $[k-1]$.…
Finding the longest common subsequence in $k$-length substrings (LCS$k$) is a recently proposed problem motivated by computational biology. This is a generalization of the well-known LCS problem in which matching symbols from two sequences…
Motivated by real-world machine learning applications, we consider a statistical classification task in a sequential setting where test samples arrive sequentially. In addition, the generating distributions are unknown and only a set of…