Related papers: Characterization of Knots and Links Arising From S…
We consider diagrams of links in $S^2$ obtained by projection from $S^3$ with the Hopf map and the minimal crossing number for such diagrams. Knots admitting diagrams with at most one crossing are classified. Some properties of these knots…
The computer artificial intelligence system AlphaFold has recently predicted previously unknown three-dimensional structures of thousands of proteins. Focusing on the subset with high-confidence scores, we algorithmically analyze these…
We present two practical and widely applicable methods, including some criteria and a general procedure, for detecting Brunnian property of a link, if each component is known to be unknot. The methods are based on observation and handwork.…
We describe the Lorenz links generated by renormalizable Lorenz maps with reducible kneading invariant $(K_f^-,K_f^+)=(X,Y)*(S,W)$, in terms of the links corresponding to each factor. This gives one new kind of operation that permits us to…
Proteins can sometimes be knotted, and for many reasons the study of knotted proteins is rapidly becoming very important. For example, it has been proposed that a knot increases the stability of a protein. Knots may also alter enzymatic…
We show that the triple-crossing number of any knot is greater or equal to twice its (canonical) genus and we show an even stronger bound in the case of links. As an application we show that this bound is strong enough to obtain the…
We use numerical simulations to study tangentially active flexible ring polymers with different knot topologies. Simple, unknotted active rings display a transition from an extended phase to a collapsed one upon increasing the degree of…
A {\it stuck knot} is a knot diagram containing designated crossings, called {\it stuck crossings}, whose incident strands are required to remain locally non-separable. These rigidity constraints restrict the allowable ambient isotopies and…
A twisted torus knot is a knot obtained from a torus knot by twisting adjacent strands by full twists. The twisted torus knots lie in $F$, the genus 2 Heegaard surface for $S^3$. Primitive/primitive and primitive/Seifert knots lie in $F$ in…
It is shown that every knot or link is the set of complex tangents of a 3-sphere smoothly embedded in the three-dimensional complex space. We show in fact that a one-dimensional submanifold of a closed orientable 3-manifold can be realised…
This paper details a series of experiments in searching for minimal energy configurations for knots and links using the computer program KnotPlot. The most interesting phenomena found in these experiments is the dependence of the…
A long standing open conjecture states that if a link $\mathcal{K}$ is alternating, then its ropelength $L(\mathcal{K})$ is at least of the order $O(Cr(\mathcal{K}))$. A recent result shows that the maximum braid index of a link bounds the…
We present new computations of approximately length-minimizing polygons with fixed thickness. These curves model the centerlines of "tight" knotted tubes with minimal length and fixed circular cross-section. Our curves approximately…
In 2000, Thomas Fink and Young Mao studied neck ties and, with certain assumptions, found 85 different ways to tie a neck tie. They gave a formal language which describes how a tie is made, giving a sequence of moves for each neck tie. The…
We introduce a new numerical invariant of knots and links from the descending diagrams. It is considered to live between the unknotting number and the bridge number.
We prove the fractal crumpled structure of collapsed unknotted polymer ring. In this state the polymer chain forms a system of densely packed folds, mutually separated in all scales. The proof is based on the numerical and analytical…
In this paper we are interested in BB knots, namely knots and links where the bridge index equals the braid index. Supported by observations from experiments, it is conjectured that BB knots possess a special geometric/physical property…
The list of knots with up to 10 crossings is commonly referred to as the Rolfsen Table. This paper presents a way to generate the Rolfsen table in a simple, clear, and reproducible manner. The methods we use are similar to those used by J.…
The perturbed Alexander invariant $\rho_1$, defined by Bar-Natan and van der Veen, is a powerful, easily computable polynomial knot invariant with deep connections to the Alexander and colored Jones polynomials. We study the behavior of…
We classify knot traces with trisection genus at most 2. We give infinitely many knots whose traces have trisection genus 3, and infinitely many knots whose traces have trisection genus 4. We also show that there exist infinite families of…