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In collider experiments, the kinematic reconstruction of heavy, short-lived particles is vital for precision tests of the Standard Model and in searches for physics beyond it. Performing kinematic reconstruction in collider events with many…

High Energy Physics - Phenomenology · Physics 2025-02-13 Callum Birch-Sykes , Brian Le , Yvonne Peters , Ethan Simpson , Zihan Zhang

Infectious diseases are notorious for their complex dynamics, which make it difficult to fit models to test hypotheses. Methods based on state-space reconstruction have been proposed to infer causal interactions in noisy, nonlinear…

Quantitative Methods · Quantitative Biology 2017-02-08 Sarah Cobey , Edward B. Baskerville

A grand challenge in modern neuroscience is to bridge the gap between the detailed mapping of microscale neural circuits and mechanistic understanding of cognitive functions. While extensive knowledge exists about neuronal connectivity and…

Neurons and Cognition · Quantitative Biology 2026-02-11 Sen Lu , Xiaoyu Zhang , Mingtao Hu , Eric Yeu-Jer Lee , Soohyeon Kim , Wei D. Lu

We define a Bayesian semi-parametric model to effectively conduct inference with unaligned longitudinal binary data. The proposed strategy is motivated by data from the Human Epilepsy Project (HEP), which collects seizure occurrence data…

Methodology · Statistics 2025-05-13 Beatrice Cantoni , Giovanni Poli , Elizabeth Juarez-Colunga , Peter Müller

We describe here the recent results of a multidisciplinary effort to design a biomarker that can actively and continuously decode the progressive changes in neuronal organization leading to epilepsy, a process known as epileptogenesis.…

Neurons and Cognition · Quantitative Biology 2017-01-26 François G. Meyer , Alexander M. Benison , Zachariah Smith , Daniel S. Barth

Structure in quantum entanglement entropy is often leveraged to focus on a small corner of the exponentially large Hilbert space and efficiently parameterize the problem of finding ground states. A typical example is the use of matrix…

Statistical Mechanics · Physics 2023-04-17 Bart Olsthoorn

Several brain disorders can be detected by observing alterations in the brain's structural and functional connectivities. Neurological findings suggest that early diagnosis of brain disorders, such as mild cognitive impairment (MCI), can…

Neurons and Cognition · Quantitative Biology 2021-10-22 Alpay Tekin , Ahmed Nebli , Islem Rekik

Pretrained embeddings based on the Transformer architecture have taken the NLP community by storm. We show that they can mathematically be reframed as a sum of vector factors and showcase how to use this reframing to study the impact of…

Computation and Language · Computer Science 2022-06-09 Timothee Mickus , Denis Paperno , Mathieu Constant

Data-driven graph learning models a network by determining the strength of connections between its nodes. The data refers to a graph signal which associates a value with each graph node. Existing graph learning methods either use simplified…

Machine Learning · Computer Science 2020-11-05 Nafiseh Ghoroghchian , David M. Groppe , Roman Genov , Taufik A. Valiante , Stark C. Draper

Renewal processes are broadly used to model stochastic behavior consisting of isolated events separated by periods of quiescence, whose durations are specified by a given probability law. Here, we identify the minimal sufficient statistic…

Statistical Mechanics · Physics 2023-07-19 Sarah Marzen , James P. Crutchfield

Information-theoretic quantities play a crucial role in understanding non-linear relationships between random variables and are widely used across scientific disciplines. However, estimating these quantities remains an open problem,…

Machine Learning · Computer Science 2025-02-28 Alberto Foresti , Giulio Franzese , Pietro Michiardi

Using historical data to predict future events has many applications in the real world, such as stock price prediction; the robot localization. In the past decades, the Convolutional long short-term memory (LSTM) networks have achieved…

Machine Learning · Computer Science 2022-12-20 Dexun Li

We present an interactive version of an evidence-driven state-merging (EDSM) algorithm for learning variants of finite state automata. Learning these automata often amounts to recovering or reverse engineering the model generating the data…

Machine Learning · Statistics 2017-08-01 Christian A. Hammerschmidt , Radu State , Sicco Verwer

Graph theoretical approaches have been proven to be effective in the characterization of connected systems, as well as in quantifying their dysfunction due to perturbation. In this paper, we show the advantage of a non-Euclidean…

Quantitative Methods · Quantitative Biology 2024-06-10 Alice Longhena , Martin Guillemaud , Mario Chavez

The identification of states and parameters from noisy measurements of a dynamical system is of great practical significance and has received a lot of attention. Classically, this problem is expressed as optimization over a class of models.…

Machine learning methods have shown promise in learning chaotic dynamical systems, enabling model-free short-term prediction and attractor reconstruction. However, when applied to large-scale, spatiotemporally chaotic systems, purely…

Chaotic Dynamics · Physics 2026-01-09 Kuei-Jan Chu , Nozomi Akashi , Akihiro Yamamoto

Neural embedding approaches have become a staple in the fields of computer vision, natural language processing, and more recently, graph analytics. Given the pervasive nature of these algorithms, the natural question becomes how to exploit…

Computation and Language · Computer Science 2020-10-27 Alexander Kalinowski , Yuan An

Neural network quantum states are a promising tool to analyze complex quantum systems given their representative power. It can however be difficult to optimize efficiently and effectively the parameters of this type of ansatz. Here we…

Quantum Physics · Physics 2023-05-10 Wenxuan Zhang , Xiansong Xu , Zheyu Wu , Vinitha Balachandran , Dario Poletti

Network representation learning has exploded recently. However, existing studies usually reconstruct networks as sequences or matrices, which may cause information bias or sparsity problem during model training. Inspired by a cognitive…

Machine Learning · Computer Science 2019-10-01 Jie Bai , Linjing Li , Daniel Zeng

In this work we study the nature of correlations among mixed states in the setup of two symmetric strips. We use various tools to determine how the bulk geometry could be reconstructed from the boundary mixed information. These tools would…

High Energy Physics - Theory · Physics 2021-08-04 Mahdis Ghodrati