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The formation and regulation of macromolecular complexes provides the backbone of most cellular processes, including gene regulation and signal transduction. The inherent complexity of assembling macromolecular structures makes current…

Molecular Networks · Quantitative Biology 2007-05-23 Leonor Saiz , Jose M. G. Vilar

Weighted simplicial complexes (WSCs) are powerful tools for describing weighted cloud data or networks with weighted nodes. In this paper, we propose a novel approach to study WSCs via the concept of polarization. Polarization of a WSC…

Commutative Algebra · Mathematics 2020-05-26 Selvi Kara

We present a detailed discussion of our novel diagrammatic coupled cluster Monte Carlo (diagCCMC) [Scott et al. J. Phys. Chem. Lett. 2019, 10, 925]. The diagCCMC algorithm performs an imaginary-time propagation of the similarity-transformed…

Chemical Physics · Physics 2020-10-28 Charles J. C. Scott , Roberto Di Remigio , T. Daniel Crawford , Alex J. W. Thom

Continuous latent variables (LVs) are a key ingredient of many generative models, as they allow modelling expressive mixtures with an uncountable number of components. In contrast, probabilistic circuits (PCs) are hierarchical discrete…

Machine Learning · Computer Science 2023-10-27 Gennaro Gala , Cassio de Campos , Robert Peharz , Antonio Vergari , Erik Quaeghebeur

The Shape Calculus is a bio-inspired calculus for describing 3D shapes moving in a space. A shape forms a 3D process when combined with a behaviour. Behaviours are specified with a timed CCS-like process algebra using a notion of channel…

Programming Languages · Computer Science 2010-11-11 Ezio Bartocci , Diletta Romana Cacciagrano , Maria Rita Di Berardini , Emanuela Merelli , Luca Tesei

Coding theoretic approached have been developed to significantly reduce the communication load in modern distributed computing system. In particular, coded distributed computing (CDC) introduced by Li et al. can efficiently trade…

Information Theory · Computer Science 2020-08-04 Nicholas Woolsey , Rong-Rong Chen , Mingyue Ji

Finite-state controllers (FSCs), such as plans with loops, are powerful and compact representations of action selection widely used in robotics, video games and logistics. There has been steady progress on synthesizing FSCs in deterministic…

Artificial Intelligence · Computer Science 2019-05-20 Laszlo Treszkai , Vaishak Belle

Continual learning aims to allow models to learn new tasks without forgetting what has been learned before. This work introduces Elastic Variational Continual Learning with Weight Consolidation (EVCL), a novel hybrid model that integrates…

Machine Learning · Computer Science 2024-06-25 Hunar Batra , Ronald Clark

Graph classification is a fundamental but challenging issue for numerous real-world applications. Despite recent great progress in image/video classification, convolutional neural networks (CNNs) cannot yet cater to graphs well because of…

Social and Information Networks · Computer Science 2020-01-13 Jiatao Jiang , Chunyan Xu , Zhen Cui , Tong Zhang , Wenming Zheng , Jian Yang

A stepped wedge cluster randomized trial is a type of longitudinal cluster design that sequentially switches clusters to intervention over time until all clusters are treated. While the traditional posttest-only parallel design requires…

Applications · Statistics 2021-01-05 Fan Li

We develop an improved stochastic formalism for the Bethe-Salpeter equation, based on an exact separation of the effective-interaction $W$ to two parts, $W=(W-v_W)+v_W$ where the latter is formally any translationally-invariant interaction…

Chemical Physics · Physics 2023-05-03 Nadine C. Bradbury , Tucker Allen , Minh Nguyen , Khaled Ibrahim , Daniel Neuhauser

The class of local operations and classical communication (LOCC) pertains to an important measurement scenario in many quantum communication schemes. While LOCC belongs to the more general class of separable operations (SEP), the exact…

Quantum Physics · Physics 2012-10-17 Eric Chitambar , Wei Cui , Hoi-Kwong Lo

Background: Canonical correlation analysis (CCA) is a classic statistical tool for investigating complex multivariate data. Correspondingly, it has found many diverse applications, ranging from molecular biology and medicine to social…

Methodology · Statistics 2019-01-14 Takoua Jendoubi , Korbinian Strimmer

Crosstalk computing, involving engineered interference between nanoscale metal lines, offers a fresh perspective to scaling through co-existence with CMOS. Through capacitive manipulations and innovative circuit style, not only primitive…

Emerging Technologies · Computer Science 2019-04-09 Md Arif Iqbal , Naveen Kumar Macha , Bhavana Tejaswini Repalle , Mostafizur Rahman

The Gaussian cluster-weighted model (CWM) is a mixture of regression models with random covariates that allows for flexible clustering of a random vector composed of response variables and covariates. In each mixture component, it adopts a…

Methodology · Statistics 2014-09-23 Antonio Punzo , Paul D. McNicholas

Reduce and control complexity is an essential practice in software design. Cyclomatic complexity (CC) is one of the most popular software metrics, applied for more than 40 years. Despite CC is an interesting metric to highlight the number…

Software Engineering · Computer Science 2020-03-03 Hugo Tremblay , Fabio Petrillo

This article proposes a novel variance estimator for within-cluster resampling (WCR) and modified within-cluster resampling (MWCR) - two existing methods for analyzing longitudinal data. WCR is a simple but computationally intensive method,…

Methodology · Statistics 2019-12-02 Daniel Xu , Pamela Shaw , Ian Barnett

We investigate the stochastic modified equation which plays an important role in the stochastic backward error analysis for explaining the mathematical mechanism of a numerical method. The contribution of this paper is threefold. First, we…

Numerical Analysis · Mathematics 2019-07-08 Chuchu Chen , Jialin Hong , Chuying Huang

Probabilistic inference provides a language for describing how organisms may learn from and adapt to their environment. The computations needed to implement probabilistic inference often require specific representations, akin to having the…

Molecular Networks · Quantitative Biology 2018-06-28 Yarden Katz , Michael Springer , Walter Fontana

In this paper, the average coset weight distribution (ACWD) of structured ensembles of LDPC (Low-density Parity-Check) matrix, which is called combined ensembles, is discussed. A combined ensemble is composed of a set of simpler ensembles…

Information Theory · Computer Science 2007-07-13 Tadashi Wadayama
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