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Transport of rodlike particles in confinement environments of macromolecular networks plays crucial roles in many important biological processes and technological applications. The relevant understanding has been limited to thin rods with…

Existing molecular communication systems, both theoretical and experimental, are characterized by low information rates. In this paper, inspired by time-of-flight mass spectrometry (TOFMS), we consider the design of a molecular…

Emerging Technologies · Computer Science 2023-07-25 Taha Sajjad , Andrew W. Eckford

This work studies optimal detection for communication over diffusion-based molecular timing (DBMT) channels. The transmitter simultaneously releases multiple information particles, where the information is encoded in the time of release.…

Information Theory · Computer Science 2017-09-12 Yonathan Murin , Nariman Farsad , Mainak Chowdhury , Andrea Goldsmith

A practical, biologically motivated case of protein complexes (immunoglobulin G and FcRII receptors) moving on the surface of mastcells, that are common parts of an immunological system, is investigated. Proteins are considered as…

Molecular Networks · Quantitative Biology 2018-02-16 Jakub Kmiecik , Pawel Kulakowski , Krzysztof Wojcik , Andrzej Jajszczyk

Combining experiments on active colloids, whose propulsion velocity can be controlled via a feedback loop, and theory of active Brownian motion, we explore the dynamics of an overdamped active particle with a motility that depends…

We present a conceptually simple method for treating electron-phonon scattering and phonon limited mobilities. By combining Green's function based transport calculations and molecular dynamics (MD), we obtain a temperature dependent…

Mesoscale and Nanoscale Physics · Physics 2017-06-28 Troels Markussen , Mattias Palsgaard , Daniele Stradi , Tue Gunst , Mads Brandbyge , Kurt Stokbro

Recently, hybrid models have emerged that combine microscopic and mesoscopic regimes in a single stochastic reaction-diffusion simulation. Microscopic simulations track every individual molecule and are generally more accurate. Mesoscopic…

Emerging Technologies · Computer Science 2015-11-20 Adam Noel , Karen C. Cheung , Robert Schober

In this paper, we propose a new Multiple-Input Multiple-Output (MIMO) Molecular Communication (MC) system where multiple types of molecules are utilized for transmission and reception of information. We call the proposed framework as…

Signal Processing · Electrical Eng. & Systems 2019-08-19 Hamid Khoshfekr Rudsari , Mohammad Reza Javan , Mahdi Orooji , Nader Mokari , Eduard A. Jorswieck

Plants and insects communicate using chemical signals like volatile organic compounds (VOCs). A plant encodes information using different blends of VOCs, which propagate through the air to represent different symbolic information. This…

Information Theory · Computer Science 2026-02-10 Bitop Maitra , Murat Kuscu , Ozgur B. Akan

This contribution exploits the duality between a viral infection process and macroscopic air-based molecular communication. Airborne aerosol and droplet transmission through human respiratory processes is modeled as an instance of a…

Signal Processing · Electrical Eng. & Systems 2022-01-19 Max Schurwanz , Peter Adam Hoeher , Sunasheer Bhattacharjee , Martin Damrath , Lukas Stratmann , Falko Dressler

Molecular communication (MC) is a concept in communication engineering, where diffusive molecules are used to transmit information between nano or micro-scale chemical reaction systems. Engineering MC to control the reaction systems in…

Systems and Control · Electrical Eng. & Systems 2024-04-01 Shoichiro Kitada , Taishi Kotsuka , Yutaka Hori

Hundreds of millions of people worldwide are affected by viral infections each year, and yet, several of them neither have vaccines nor effective treatment during and post-infection. This challenge has been highlighted by the COVID-19…

The stochastic trajectories of molecules in living cells, as well as the dynamics in many other complex systems, often exhibit memory in their path over long periods of time. In addition, these systems can show dynamic heterogeneities due…

Statistical Mechanics · Physics 2024-07-10 Michał Balcerek , Agnieszka Wyłomańska , Krzysztof Burnecki , Ralf Metzler , Diego Krapf

Cells must continuously sense and respond to time-varying environmental stimuli. These signals are transmitted and processed by biochemical signalling networks. However, the biochemical reactions making up these networks are intrinsically…

Molecular Networks · Quantitative Biology 2015-05-18 Filipe Tostevin , Pieter Rein ten Wolde

We use computer simulations to test a simple idea for mapping between long-time self diffusivities obtained from molecular and Brownian dynamics. The strategy we explore is motivated by the behavior of fluids comprising particles that…

Soft Condensed Matter · Physics 2011-10-25 Mark J. Pond , Jeffrey R. Errington , Thomas M. Truskett

In this letter, we consider a 3D molecular communication via diffusion system (MCvDS) with a single point transmitter and multiple fully-absorbing spherical receivers whose centers are distributed as a Poisson point process (PPP) in the…

Information Theory · Computer Science 2020-08-20 Nithin V. Sabu , Abhishek K. Gupta

Vibrationally inelastic electron transport through a molecular bridge that is connected to two leads is investigated. The study is based on a generic model of vibrational excitation in resonant transmission of electrons through a molecular…

Mesoscale and Nanoscale Physics · Physics 2009-11-10 Martin Cizek , Michael Thoss , Wolfgang Domcke

Molecular recognition, which is essential in processing information in biological systems, takes place in a crowded noisy biochemical environment and requires the recognition of a specific target within a background of various similar…

Biomolecules · Quantitative Biology 2010-07-27 Yonatan Savir , Tsvi Tlusty

Molecular Communication (MC) is a pivotal enabler for the Internet of Bio-Nano Things (IoBNT). However, current research often relies on super-capable individual agents with complex transceiver architectures that defy the energy and…

Adaptation and Self-Organizing Systems · Physics 2026-01-27 Boran A. Kilic , Ozgur B. Akan

A fundamental problem in the study of complex networks is to provide quantitative measures of correlation and information flow between different parts of a system. To this end, several notions of communicability have been introduced and…

Physics and Society · Physics 2015-04-08 Ernesto Estrada , Naomichi Hatano , Michele Benzi
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