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The tree edit distance is a natural dissimilarity measure between rooted ordered trees whose nodes are labeled over an alphabet $\Sigma$. It is defined as the minimum number of node edits (insertions, deletions, and relabelings) required to…

Data Structures and Algorithms · Computer Science 2025-07-04 Tomasz Kociumaka , Ali Shahali

In the problem of minimum connected dominating set with routing cost constraint, we are given a graph $G=(V,E)$, and the goal is to find the smallest connected dominating set $D$ of $G$ such that, for any two non-adjacent vertices $u$ and…

Data Structures and Algorithms · Computer Science 2018-02-20 Tung-Wei Kuo

We present a quantum algorithm in bioinformatics for solving the Binary Near-Perfect Phylogeny Problem (BNPP) with a complexity bound of $O(8.926^q + 8^q nm2)$, where n is the number of input taxa and m is the sequence length for each taxon…

Quantum Physics · Physics 2025-10-14 Lingfa Meng , David Salvador Novo , Albert H. Werner , Samir Bhatt

We present a family of fast pseudo-approximation algorithms for the minimum balanced vertex separator problem in a graph. Given a graph $G=(V,E)$ with $n$ vertices and $m$ edges, and a (constant) balance parameter $c\in(0,1/2)$, where $G$…

Data Structures and Algorithms · Computer Science 2026-03-18 Vladimir Kolmogorov , Jack Spalding-Jamieson

Given an $n$-vertex non-negatively real-weighted graph $G$, whose vertices are partitioned into a set of $k$ clusters, a \emph{clustered network design problem} on $G$ consists of solving a given network design optimization problem on $G$,…

Data Structures and Algorithms · Computer Science 2018-02-01 Mattia D'Emidio , Luca Forlizzi , Daniele Frigioni , Stefano Leucci , Guido Proietti

In the k-edge connected directed Steiner tree (k-DST) problem, we are given a directed graph G on n vertices with edge-costs, a root vertex r, a set of h terminals T and an integer k. The goal is to find a min-cost subgraph H of G that…

Data Structures and Algorithms · Computer Science 2016-03-01 Bundit Laekhanukit

We consider a special case of the generalized minimum spanning tree problem (GMST) and the generalized travelling salesman problem (GTSP) where we are given a set of points inside the integer grid (in Euclidean plane) where each grid cell…

Discrete Mathematics · Computer Science 2015-07-17 Binay Bhattacharya , Ante Ćustić , Akbar Rafiey , Arash Rafiey , Vladyslav Sokol

We consider the problem of augmenting an $n$-vertex tree with one shortcut in order to minimize the diameter of the resulting graph. The tree is embedded in an unknown space and we have access to an oracle that, when queried on a pair of…

Data Structures and Algorithms · Computer Science 2018-10-03 Davide Bilò

We present a low-energy deterministic distributed algorithm that computes exact Single-Source Shortest Paths (SSSP) in near-optimal time: it runs in $\tilde{O}(n)$ rounds and each node is awake during only $poly(\log n)$ rounds. When a node…

Data Structures and Algorithms · Computer Science 2024-09-25 Mohsen Ghaffari , Anton Trygub

In recent years, spectral clustering has become one of the most popular clustering algorithms for image segmentation. However, it has restricted applicability to large-scale images due to its high computational complexity. In this paper, we…

Image and Video Processing · Electrical Eng. & Systems 2018-12-13 Chongyang Zhang , Guofeng Zhu , Minxin Chen , Hong Chen , Chenjian Wu

This paper presents a distributed O(1)-approximation algorithm, with expected-$O(\log \log n)$ running time, in the $\mathcal{CONGEST}$ model for the metric facility location problem on a size-$n$ clique network. Though metric facility…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-08-13 Andrew Berns , James Hegeman , Sriram V. Pemmaraju

We provide a simple new randomized contraction approach to the global minimum cut problem for simple undirected graphs. The contractions exploit 2-out edge sampling from each vertex rather than the standard uniform edge sampling. We…

Data Structures and Algorithms · Computer Science 2019-09-04 Mohsen Ghaffari , Krzysztof Nowicki , Mikkel Thorup

In this paper, we propose the Ordered Median Tree Location Problem (OMT). The OMT is a single-allocation facility location problem where p facilities must be placed on a network connected by a non-directed tree. The objective is to minimize…

Discrete Mathematics · Computer Science 2025-02-11 Miguel A. Pozo , Justo Puerto , Alberto Torrejon

We present a new algorithm for generating a uniformly random spanning tree in an undirected graph. Our algorithm samples such a tree in expected $\tilde{O}(m^{4/3})$ time. This improves over the best previously known bound of…

Data Structures and Algorithms · Computer Science 2017-03-16 Aleksander Madry , Damian Straszak , Jakub Tarnawski

This paper studies lower bounds for fundamental optimization problems in the CONGEST model. We show that solving problems exactly in this model can be a hard task, by providing $\tilde{\Omega}(n^2)$ lower bounds for cornerstone problems,…

Data Structures and Algorithms · Computer Science 2019-05-27 Nir Bachrach , Keren Censor-Hillel , Michal Dory , Yuval Efron , Dean Leitersdorf , Ami Paz

The \emph{Steiner tree} problem is one of the fundamental and classical problems in combinatorial optimization. In this paper, we study this problem in the $\mathcal{CONGESTED}$ $\mathcal{CLIQUE}$ model of distributed computing and present…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-31 Parikshit Saikia , Sushanta Karmakar

We propose a self-stabilizing algorithm for computing a maximal matching in an anonymous network. The complexity is $O(n^3)$ moves with high probability, under the adversarial distributed daemon. In this algorithm, each node can determine…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-11-18 Johanne Cohen , Jonas Lefèvre , Khaled Maâmra , Laurence Pilard , Devan Sohier

We consider the ``minimum degree spanning tree'' problem. As input, we receive an undirected, connected graph $G=(V, E)$ with $n$ nodes and $m$ edges, and our task is to find a spanning tree $T$ of $G$ that minimizes $\max_{u \in V}…

Data Structures and Algorithms · Computer Science 2026-03-02 Sayan Bhattacharya , Ermiya Farokhnejad , Haoze Wang

The run time complexity of state-of-the-art inference algorithms in graph-based dependency parsing is super-linear in the number of input words (n). Recently, pruning algorithms for these models have shown to cut a large portion of the…

Computation and Language · Computer Science 2016-06-09 Effi Levi , Roi Reichart , Ari Rappoport

In the node-weighted prize-collecting Steiner tree problem (NW-PCST) we are given an undirected graph $G=(V,E)$, non-negative costs $c(v)$ and penalties $\pi(v)$ for each $v \in V$. The goal is to find a tree $T$ that minimizes the total…

Data Structures and Algorithms · Computer Science 2013-04-11 Jochen Könemann , Sina Sadeghian , Laura Sanità
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