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In this work, we consider the reformulation of hierarchical ($\mathcal{H}$) matrix algorithms for many-core processors with a model implementation on graphics processing units (GPUs). $\mathcal{H}$ matrices approximate specific dense…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-04 Peter Zaspel

Multiresolution Matrix Factorization (MMF) was recently introduced as a method for finding multiscale structure and defining wavelets on graphs/matrices. In this paper we derive pMMF, a parallel algorithm for computing the MMF…

Numerical Analysis · Computer Science 2015-07-17 Risi Kondor , Nedelina Teneva , Pramod K. Mudrakarta

Graph Neural Networks (GNNs) have achieved significant improvements in various domains. Sparse Matrix-Matrix multiplication (SpMM) is a fundamental operator in GNNs, which performs a multiplication between a sparse matrix and a dense…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-07-08 Guyue Huang , Guohao Dai , Yu Wang , Huazhong Yang

We present a distributed-memory library for computations with dense structured matrices. A matrix is considered structured if its off-diagonal blocks can be approximated by a rank-deficient matrix with low numerical rank. Here, we use…

Mathematical Software · Computer Science 2015-06-29 François-Henry Rouet , Xiaoye S. Li , Pieter Ghysels , Artem Napov

Tensor accelerators have gained popularity because they provide a cheap and efficient solution for speeding up computational-expensive tasks in Deep Learning and, more recently, in other Scientific Computing applications. However, since…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-15 Paolo Sylos Labini , Massimo Bernaschi , Francesco Silvestri , Flavio Vella

Matrix multiplication is integral to various scientific and engineering disciplines, including machine learning, image processing, and gaming. With the increasing data volumes in areas like machine learning, the demand for efficient…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-29 Temitayo Adefemi

The sparse matrix-vector (SpMV) multiplication is an important computational kernel, but it is notoriously difficult to execute efficiently. This paper investigates algorithm performance for unstructured sparse matrices, which are more…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-02-27 Kobe Bergmans , Karl Meerbergen , Raf Vandebril

We present a sparse linear system solver that is based on a multifrontal variant of Gaussian elimination, and exploits low-rank approximation of the resulting dense frontal matrices. We use hierarchically semiseparable (HSS) matrices, which…

Mathematical Software · Computer Science 2015-02-27 Pieter Ghysels , Xiaoye S. Li , Francois-Henry Rouet , Samuel Williams , Artem Napov

The Massive Parallel Computation (MPC) model is a theoretical framework for popular parallel and distributed platforms such as MapReduce, Hadoop, or Spark. We consider the task of computing a large matching or small vertex cover in this…

Data Structures and Algorithms · Computer Science 2018-07-24 Krzysztof Onak

Computation of a signal's estimated covariance matrix is an important building block in signal processing, e.g., for spectral estimation. Each matrix element is a sum of products of elements in the input matrix taken over a sliding window.…

Data Structures and Algorithms · Computer Science 2013-03-12 Oded Green , Lior David , Ami Galperin , Yitzhak Birk

We evaluate optimized parallel sparse matrix-vector operations for several representative application areas on widespread multicore-based cluster configurations. First the single-socket baseline performance is analyzed and modeled with…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-03-01 Gerald Schubert , Holger Fehske , Georg Hager , Gerhard Wellein

The GraphBLAS high performance library standard has yielded capabilities beyond enabling graph algorithms to be readily expressed in the language of linear algebra. These GraphBLAS capabilities enable new performant ways of thinking about…

Data Structures and Algorithms · Computer Science 2025-09-24 Hayden Jananthan , Jeremy Kepner , Michael Jones , Vijay Gadepally , Michael Houle , Peter Michaleas , Chasen Milner , Alex Pentland

Partitioning graphs into blocks of roughly equal size such that few edges run between blocks is a frequently needed operation when processing graphs on a parallel computer. When a topology of a distributed system is known an important task…

Data Structures and Algorithms · Computer Science 2020-01-23 Marcelo Fonseca Faraj , Alexander van der Grinten , Henning Meyerhenke , Jesper Larsson Träff , Christian Schulz

Graph-based representations underlie a wide range of scientific problems. Graph connectivity is typically represented as a sparse matrix in the Compressed Sparse Row format. Large-scale graphs rely on distributed storage, allocating…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-12-14 Bruno Magalhaes , Felix Schürmann

Sparse linear algebra kernels play a critical role in numerous applications, covering from exascale scientific simulation to large-scale data analytics. Offloading linear algebra kernels on one GPU will no longer be viable in these…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-19 Jieyang Chen , Chenhao Xie , Jesun S Firoz , Jiajia Li , Shuaiwen Leon Song , Kevin Barker , Mark Raugas , Ang Li

Over the last two decades, frameworks for distributed-memory parallel computation, such as MapReduce, Hadoop, Spark and Dryad, have gained significant popularity with the growing prevalence of large network datasets. The Massively Parallel…

Data Structures and Algorithms · Computer Science 2022-07-19 Amartya Shankha Biswas , Talya Eden , Quanquan C. Liu , Slobodan Mitrović , Ronitt Rubinfeld

Parallel matrix multiplication is one of the most studied fundamental problems in distributed and high performance computing. We obtain a new parallel algorithm that is based on Strassen's fast matrix multiplication and minimizes…

Data Structures and Algorithms · Computer Science 2012-02-16 Grey Ballard , James Demmel , Olga Holtz , Benjamin Lipshitz , Oded Schwartz

We develop a family of parallel algorithms for the SpKAdd operation that adds a collection of k sparse matrices. SpKAdd is a much needed operation in many applications including distributed memory sparse matrix-matrix multiplication…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-21 Md Taufique Hussain , Guttu Sai Abhishek , Aydin Buluç , Ariful Azad

Sparse data structures are commonly used in neural networks to reduce the memory footprint. These data structures are compact but cause irregularities such as random memory accesses, which prevent efficient use of the memory hierarchy. GPUs…

Programming Languages · Computer Science 2025-06-19 Hossein Albakri , Kazem Cheshmi

We consider a sparse matrix-matrix multiplication (SpGEMM) setting where one matrix is square and the other is tall and skinny. This special variant, called TS-SpGEMM, has important applications in multi-source breadth-first search,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-08-23 Isuru Ranawaka , Md Taufique Hussain , Charles Block , Gerasimos Gerogiannis , Josep Torrellas , Ariful Azad