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Recurrent neural networks (RNNs) process input text sequentially and model the conditional transition between word tokens. In contrast, the advantages of recursive networks include that they explicitly model the compositionality and the…

Computation and Language · Computer Science 2017-03-01 Tsendsuren Munkhdalai , Hong Yu

Originating in quantum physics, tensor networks (TNs) have been widely adopted as exponential machines and parameter decomposers for recognition tasks. Typical TN models, such as Matrix Product States (MPS), have not yet achieved successful…

Computer Vision and Pattern Recognition · Computer Science 2025-02-17 Chang Nie , Junfang Chen , Yajie Chen

Convolutional neural network (CNN) and recurrent neural network (RNN) are two popular architectures used in text classification. Traditional methods to combine the strengths of the two networks rely on streamlining them or concatenating…

Computation and Language · Computer Science 2020-06-30 Shengfei Lyu , Jiaqi Liu

The recent explosion of genomic data has underscored the need for interpretable and comprehensive analyses that can capture complex phylogenetic relationships within and across species. Recombination, reassortment and horizontal gene…

Quantitative Methods · Quantitative Biology 2016-09-28 Pablo G. Camara , Arnold J. Levine , Raul Rabadan

The task of table structure recognition aims to recognize the internal structure of a table, which is a key step to make machines understand tables. Currently, there are lots of studies on this task for different file formats such as ASCII…

Information Retrieval · Computer Science 2019-08-29 Zewen Chi , Heyan Huang , Heng-Da Xu , Houjin Yu , Wanxuan Yin , Xian-Ling Mao

Recurrent neural networks (RNNs) have been widely applied to various sequential tasks such as text processing, video recognition, and molecular property prediction. We introduce the first coverage-guided testing tool, coined testRNN, for…

Neural and Evolutionary Computing · Computer Science 2019-06-21 Wei Huang , Youcheng Sun , Xiaowei Huang , James Sharp

Recent studies have shown that Dense Retrieval (DR) techniques can significantly improve the performance of first-stage retrieval in IR systems. Despite its empirical effectiveness, the application of DR is still limited. In contrast to…

Information Retrieval · Computer Science 2023-04-27 Haitao Li , Qingyao Ai , Jingtao Zhan , Jiaxin Mao , Yiqun Liu , Zheng Liu , Zhao Cao

This paper develops a novel nested sequent proof-search methodology for intuitionistic tense logics (ITLs), supporting finite counter-model extraction. We introduce a new loop-checking method that detects repeating nested sequents using…

Logic in Computer Science · Computer Science 2026-04-01 Tim S. Lyon

A binary tanglegram is a pair <S,T> of binary trees whose leaf sets are in one-to-one correspondence; matching leaves are connected by inter-tree edges. For applications, for example in phylogenetics or software engineering, it is required…

Data Structures and Algorithms · Computer Science 2009-05-15 Martin Nöllenburg , Danny Holten , Markus Völker , Alexander Wolff

In phylogenetics, phylogenetic trees are rooted binary trees, whereas phylogenetic networks are rooted arbitrary acyclic digraphs. Edges are directed away from the root and leaves are uniquely labeled with taxa in phylogenetic networks. For…

Populations and Evolution · Quantitative Biology 2016-03-30 Andreas DM Gunawan , Bhaskar DasGupta , Louxin Zhang

The Recurrent Neural Networks and their variants have shown promising performances in sequence modeling tasks such as Natural Language Processing. These models, however, turn out to be impractical and difficult to train when exposed to very…

Computer Vision and Pattern Recognition · Computer Science 2017-07-07 Yinchong Yang , Denis Krompass , Volker Tresp

Table structure recognition (TSR) aims to convert tabular images into a machine-readable format, where a visual encoder extracts image features and a textual decoder generates table-representing tokens. Existing approaches use classic…

Computer Vision and Pattern Recognition · Computer Science 2023-11-10 ShengYun Peng , Seongmin Lee , Xiaojing Wang , Rajarajeswari Balasubramaniyan , Duen Horng Chau

We propose a novel framework for finding correspondences in images based on a deep neural network that, given two images and a query point in one of them, finds its correspondence in the other. By doing so, one has the option to query only…

Computer Vision and Pattern Recognition · Computer Science 2021-08-18 Wei Jiang , Eduard Trulls , Jan Hosang , Andrea Tagliasacchi , Kwang Moo Yi

We describe an attentive encoder that combines tree-structured recursive neural networks and sequential recurrent neural networks for modelling sentence pairs. Since existing attentive models exert attention on the sequential structure, we…

Computation and Language · Computer Science 2016-10-11 Yao Zhou , Cong Liu , Yan Pan

We have introduced a novel multiplex recurrence network (MRN) approach by combining recurrence networks with the multiplex network approach in order to investigate multivariate time series. The potential use of this approach is demonstrated…

Data Analysis, Statistics and Probability · Physics 2020-03-09 Deniz Eroglu , Norbert Marwan , Martina Stebich , Jürgen Kurths

For the high dimensional data representation, nonnegative tensor ring (NTR) decomposition equipped with manifold learning has become a promising model to exploit the multi-dimensional structure and extract the feature from tensor data.…

Machine Learning · Computer Science 2021-09-07 Xinhai Zhao , Yuyuan Yu , Guoxu Zhou , Qibin Zhao , Weijun Sun

Genomics has revolutionized biology, enabling the interrogation of whole transcriptomes, genome-wide binding sites for proteins, and many other molecular processes. However, individual genomic assays measure elements that interact in vivo…

Machine Learning · Statistics 2022-06-08 Sumanta Basu , Karl Kumbier , James B. Brown , Bin Yu

Recently, much attention has been given to understanding recombination events along a chromosome in a variety of field. For instance, many population genetics problems are limited by the inaccuracy of inferred evolutionary histories of…

Quantitative Methods · Quantitative Biology 2017-10-31 Jacqueline Kane , Joseph Rusinko , Katherine Thompson

In this paper we introduce the Ladder Algorithm; a novel recurrent algorithm to detect repetitive structures in natural images with high accuracy using little training data. We then demonstrate the algorithm on the task of extracting…

Computer Vision and Pattern Recognition · Computer Science 2020-04-09 Rhydian Windsor , Amir Jamaludin

This paper presents a neural network built upon Transformers, namely PlaneTR, to simultaneously detect and reconstruct planes from a single image. Different from previous methods, PlaneTR jointly leverages the context information and the…

Computer Vision and Pattern Recognition · Computer Science 2021-07-29 Bin Tan , Nan Xue , Song Bai , Tianfu Wu , Gui-Song Xia