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The abundance of a species' population in an ecosystem is rarely stationary, often exhibiting large fluctuations over time. Using historical data on marine species, we show that the year-to-year fluctuations of population growth rate obey a…

Adaptation and Self-Organizing Systems · Physics 2015-06-02 Jie Sun , Sean P. Cornelius , John Janssen , Kimberly A. Gray , Adilson E. Motter

It has been recently shown that the exponential growth rate of a population of bacterial cells starting from a single cell shows transient oscillations due to early synchronized bursts of division. These oscillations are enhanced by cell…

Populations and Evolution · Quantitative Biology 2024-08-05 Yaïr Hein , Farshid Jafarpour

Selection, mutation and random drift affect the dynamics of allele frequencies and consequently of quantitative traits. While the macroscopic dynamics of quantitative traits can be measured, the underlying allele frequencies are typically…

Populations and Evolution · Quantitative Biology 2016-03-15 Katarína Boďová , Gašper Tkačik , Nicholas H. Barton

Strong positive feedback is considered a necessary condition to observe abrupt shifts of ecosystems. A few previous studies have shown that demographic noise -- arising from the probabilistic and discrete nature of birth and death processes…

Populations and Evolution · Quantitative Biology 2021-06-22 Sabiha Majumder , Ayan Das , Appilineni Kushal , Sumithra Sankaran , Vishwesha Guttal

We consider the dynamics of two coupled three-species population patches, incorporating the Allee Effect, focussing on the onset of extreme events in the coupled system. First we show that the interplay between coupling and the Allee effect…

Populations and Evolution · Quantitative Biology 2021-10-05 Deeptajyoti Sen , Sudeshna Sinha

A function with finite asymptotic limits gives rise to a transition equation between a "past system" and a "future system". This question is analyzed in the case of nonautonomous coercive nonlinear scalar ordinary differential equations…

Dynamical Systems · Mathematics 2023-10-11 Jesús Dueñas , Carmen Núñez , Rafael Obaya

Several groups have recently modeled evolutionary transitions from an ancestral allele to a beneficial allele separated by one or more intervening mutants. The beneficial allele can become fixed if a succession of intermediate mutants are…

Populations and Evolution · Quantitative Biology 2011-07-14 Stephen R Proulx

Horizontal gene transfer consists in exchanging genetic materials between microorganisms during their lives. This is a major mechanism of bacterial evolution and is believed to be of main importance in antibiotics resistance. We consider a…

Probability · Mathematics 2019-12-18 Nicolas Champagnat , Sylvie Méléard , Viet Chi Tran

The Wright-Fisher (W-F) diffusion model serves as a foundational framework for interpreting population evolution through allele frequency dynamics over time. Despite the known transition probability between consecutive generations, an exact…

Methodology · Statistics 2024-06-24 Tania Roa , María Inés Fariello , Gerardo Martínez , José León

Percolation theory concerns the emergence of connected clusters that percolate through a networked system. Previous studies ignored the effect that a node outside the percolating cluster may actively induce its inside neighbours to exit the…

Statistical Mechanics · Physics 2013-09-12 Jin-Hua Zhao , Hai-Jun Zhou , Yang-Yu Liu

Classical ecological theory predicts that environmental stochasticity increases extinction risk by reducing the average per-capita growth rate of populations. To understand the interactive effects of environmental stochasticity, spatial…

Probability · Mathematics 2015-12-16 Steven N. Evans , Peter L. Ralph , Sebastian J. Schreiber , Arnab Sen

This article deals with an autonomous differential equation model that studies the interaction between the immune system and the growth of tumor cells with strong and weak Allee effects. The Allee effect refers to interspecific competition,…

Dynamical Systems · Mathematics 2023-06-30 Eymard Hernández-López , Mayra Núñez-López , Napoleón Navarro-Tito

Plankton constitutes the productive base of aquatic ecosystems and plays an essential role in the global carbon cycle. The impact of hydrodynamic conditions on the biological activity of plankton species can manifest in a variety of…

Fluid Dynamics · Physics 2021-10-06 Alice Jaccod , Stefano Berti , Enrico Calzavarini , Sergio Chibbaro

We introduce a correlated static model and investigate a percolation transition. The model is a modification of the static model and is characterized by assortative degree-degree correlation. As one varies the edge density, the network…

Statistical Mechanics · Physics 2015-05-13 Sang-Woo Kim , Jae Dong Noh

We study the percolation properties of the growing clusters model. In this model, a number of seeds placed on random locations on a lattice are allowed to grow with a constant velocity to form clusters. When two or more clusters eventually…

Statistical Mechanics · Physics 2015-05-18 Nikolaos Tsakiris , Michail Maragakis , Kosmas Kosmidis , Panos Argyrakis

It is well-established that including spatial structure and stochastic noise in models for predator-prey interactions invalidates the classical deterministic Lotka-Volterra picture of neutral population cycles. In contrast, stochastic…

Populations and Evolution · Quantitative Biology 2011-09-20 Uwe C. Tauber

Theory predicts rapid genetic drift during invasions, yet many expanding populations maintain high genetic diversity. We find that genetic drift is dramatically suppressed when dispersal rates increase with the population density because…

Populations and Evolution · Quantitative Biology 2019-03-29 Gabriel Birzu , Sakib Matin , Oskar Hallatschek , Kirill S. Korolev

Evolution occurs in populations of reproducing individuals. The structure of a biological population affects which traits evolve. Understanding evolutionary game dynamics in structured populations is difficult. Precise results have been…

Populations and Evolution · Quantitative Biology 2017-08-16 Benjamin Allen , Gabor Lippner , Yu-Ting Chen , Babak Fotouhi , Naghmeh Momeni , Martin A. Nowak , Shing-Tung Yau

Vegetation in semi-arid ecosystems frequently organizes into spatially heterogeneous mosaics that regulate ecosystem functioning, productivity, and resilience. These patterns arise from local biological interactions, including facilitation…

Populations and Evolution · Quantitative Biology 2026-02-06 Àlex Giménez-Romero , Bernard A. Afful , Priscilla E. Greenwood , Manuel A. Matías , Luis F. Gordillo

We consider a stochastic model of population dynamics where each individual is characterised by a trait in {0,1,...,L} and has a natural reproduction rate, a logistic death rate due to age or competition and a probability of mutation…

Probability · Mathematics 2019-02-12 Anton Bovier , Loren Coquille , Charline Smadi
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