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Nonnegative matrix factorization (NMF) is a popular method used to reduce dimensionality in data sets whose elements are nonnegative. It does so by decomposing the data set of interest, $\mathbf{X}$, into two lower rank nonnegative matrices…

Methodology · Statistics 2021-07-05 Phillip Shreeves , Jeffrey L. Andrews , Xinchen Deng , Ramie Ali-Adeeb , Andrew Jirasek

Many annotation problems in computer vision can be phrased as integer linear programs (ILPs). The use of standard industrial solvers does not to exploit the underlying structure of such problems eg, the skeleton in pose estimation. The…

Computer Vision and Pattern Recognition · Computer Science 2017-09-14 Shaofei Wang , Konrad Kording , Julian Yarkony

Nonnegative matrix factorization (NMF) has become a widely used tool for the analysis of high-dimensional data as it automatically extracts sparse and meaningful features from a set of nonnegative data vectors. We first illustrate this…

Machine Learning · Statistics 2014-12-10 Nicolas Gillis

For given real or complex $m \times n$ data matrices $X$, $Y$, we investigate when there is a matrix $A$ such that $AX = Y$, and $A$ is invertible, Hermitian, positive (semi)definite, unitary, an orthogonal projection, a reflection, complex…

Functional Analysis · Mathematics 2025-04-25 Kyle Bierly , Stephan Ramon Garcia , Roger A. Horn

Image restoration refers to the process of reconstructing noisy, destroyed, or missing parts of an image, which is an ill-posed inverse problem. A specific regularization term and image degradation are typically assumed to achieve…

Image and Video Processing · Electrical Eng. & Systems 2025-04-15 Jianwei Ke

With the advancement of high-throughput biotechnologies, we increasingly accumulate biomedical data about diseases, especially cancer. There is a need for computational models and methods to sift through, integrate, and extract new…

Quantitative Methods · Quantitative Biology 2020-07-03 Thomas Gaudelet , Noel Malod-Dognin , Natasa Przulj

We present a novel method for mixed-integer optimization problems with multivariate and Lipschitz continuous nonlinearities. In particular, we do not assume that the nonlinear constraints are explicitly given but that we can only evaluate…

Optimization and Control · Mathematics 2023-03-22 Julia Grübel , Richard Krug , Martin Schmidt , Winnifried Wollner

We derive and analyse a new variant of the iteratively regularized Landweber iteration, for solving linear and nonlinear ill-posed inverse problems. The method takes into account training data, which are used to estimate the interior of a…

Numerical Analysis · Mathematics 2020-03-19 Andrea Aspri , Sebastian Banert , Ozan Öktem , Otmar Scherzer

Over the past few years, there has been a considerable spread of microarray technology in many biological patterns, particularly in those pertaining to cancer diseases like leukemia, prostate, colon cancer, etc. The primary bottleneck that…

Quantitative Methods · Quantitative Biology 2020-07-20 Parth Patel , Kalpdrum Passi , Chakresh Kumar Jain

Several novel mixed-integer linear and bilinear formulations are proposed for the optimum communication spanning tree problem. They implement the distance-based approach: graph distances are directly modeled by continuous, integral, or…

Optimization and Control · Mathematics 2021-01-12 Alexander Veremyev , Mikhail Goubko

The study of solving inverse singular value problems for nonnegative matrices has been around for decades. It is clear that an inverse singular problem is trivial if the desirable matrix is not restricted to a certain structure. Provided…

Numerical Analysis · Mathematics 2013-12-11 Sheng-Jhih Wu , Matthew M. Lin

The distribution network restoration problem is by nature a mixed integer and non-linear optimization problem due to the switching decisions and Optimal Power Flow (OPF) constraints, respectively. The link between these two parts involves…

Optimization and Control · Mathematics 2020-02-25 Hossein Sekhavatmanesh , Rachid Cherkaoui

This work is motivated by multimodality breast cancer imaging data, which is quite challenging in that the signals of discrete tumor-associated microvesicles (TMVs) are randomly distributed with heterogeneous patterns. This imposes a…

Machine Learning · Statistics 2019-03-22 Xiwei Tang , Xuan Bi , Annie Qu

The nonnegative matrix factorization (NMF) is widely used in signal and image processing, including bio-informatics, blind source separation and hyperspectral image analysis in remote sensing. A great challenge arises when dealing with a…

Computer Vision and Pattern Recognition · Computer Science 2016-03-29 Fei Zhu , Paul Honeine , Maya Kallas

Multigraph matching is a recent variant of the graph matching problem. In this framework, the optimization procedure considers several graphs and enforces the consistency of the matches along the graphs. This constraint can be formalized as…

Machine Learning · Computer Science 2022-10-12 François-Xavier Dupé , Rohit Yadav , Guillaume Auzias , S. Takerkart

Bringing together nonlinear optimization with polyhedral and integrality constraints enables versatile modeling, but poses significant computational challenges. We investigate a method to address these problems based on sequential…

Optimization and Control · Mathematics 2024-10-08 Alberto De Marchi

Block-structured integer linear programs (ILPs) play an important role in various application fields. We address $n$-fold ILPs where the matrix $\mathcal{A}$ has a specific structure, i.e., where the blocks in the lower part of…

Data Structures and Algorithms · Computer Science 2025-10-13 Klaus Jansen , Kai Kahler , Lis Pirotton , Malte Tutas

Recently, Hajirasouliha and Raphael (WABI 2014) proposed a model for deconvoluting mixed tumor samples measured from a collection of high-throughput sequencing reads. This is related to understanding tumor evolution and critical cancer…

Populations and Evolution · Quantitative Biology 2016-07-11 Ademir Hujdurović , Urša Kačar , Martin Milanič , Bernard Ries , Alexandru I. Tomescu

We consider the problem of low-rank decomposition of incomplete multiway tensors. Since many real-world data lie on an intrinsically low dimensional subspace, tensor low-rank decomposition with missing entries has applications in many data…

Numerical Analysis · Computer Science 2016-08-24 Linxiao Yang , Jun Fang , Hongbin Li , Bing Zeng

The Two-dimensional Bin Packing Problem calls for packing a set of rectangular items into a minimal set of larger rectangular bins. Items must be packed with their edges parallel to the borders of the bins, cannot be rotated and cannot…

Optimization and Control · Mathematics 2019-09-17 Jean-François Côté , Mohamed Haouari , Manuel Iori
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