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Physical and functional constraints on biological networks lead to complex topological patterns across multiple scales in their organization. A particular type of higher-order network feature that has received considerable interest is…

Quantitative Methods · Quantitative Biology 2024-10-15 Alexis Bénichou , Jean-Baptiste Masson , Christian L. Vestergaard

Protein interaction networks (PINs) are often used to "learn" new biological function from their topology. Since current PINs are noisy, their computational de-noising via link prediction (LP) could improve the learning accuracy. LP uses…

Molecular Networks · Quantitative Biology 2013-07-15 Ryan W. Solava , Tijana Milenković

Transcription networks, and other directed networks can be characterized by some topological observables such as for example subgraph occurrence (network motifs). In order to perform such kind of analysis, it is necessary to be able to…

Quantitative Methods · Quantitative Biology 2007-06-04 D. Fusco , B. Bassetti , P. Jona , M. Cosentino Lagomarsino

As parallelism becomes critically important in the semiconductor technology, high-performance computing, and cloud applications, parallel network systems will increasingly follow suit. Today, parallelism is an essential architectural…

Performance · Computer Science 2017-07-11 Anna Engelmann , Wolfgang Bziuk , Admela Jukan , Muriel Medard

Objective: Modelling the associations from high-throughput experimental molecular data has provided unprecedented insights into biological pathways and signalling mechanisms. Graphical models and networks have especially proven to be useful…

Machine Learning · Statistics 2013-04-24 Marco Scutari , Radhakrishnan Nagarajan

The problem of maximum rate achievable with analog network coding for a unicast communication over a layered wireless relay network with directed links is considered. A relay node performing analog network coding scales and forwards the…

Information Theory · Computer Science 2012-05-22 Samar Agnihotri , Sidharth Jaggi , Minghua Chen

One of the fundamental challenges in the design of distributed wireless networks is the large dynamic range of network state. Since continuous tracking of global network state at all nodes is practically impossible, nodes can only acquire…

Information Theory · Computer Science 2017-04-18 Alireza Vahid , Vaneet Aggarwal , A. Salman Avestimehr , Ashutosh Sabharwal

We design a cross-layer approach to optimize the joint use of multi-packet reception and network coding, in order to relieve congestion. We construct a model for the behavior of the 802.11 MAC and apply it to several key canonical topology…

Networking and Internet Architecture · Computer Science 2011-02-01 Jason Cloud , Linda Zeger , Muriel Médard

We propose a mechanism that incorporates network coding into TCP with only minor changes to the protocol stack, thereby allowing incremental deployment. In our scheme, the source transmits random linear combinations of packets currently in…

Networking and Internet Architecture · Computer Science 2016-11-17 Jay Kumar Sundararajan , Devavrat Shah , Muriel Medard , Michael Mitzenmacher , Joao Barros

The experimental realization of quantum information systems will be difficult due to how sensitive quantum information is to noise. Overcoming this sensitivity is central to designing quantum networks capable of transmitting quantum…

Quantum Physics · Physics 2023-07-13 Matheus Guedes de Andrade , Jake Navas , Inès Montaño , Don Towsley

These Network Coding improves the network operation beyond the traditional routing or store-and-forward, by mixing of data stream within a network. Network coding techniques explicitly minimizes the total no of transmission in wireless…

Networking and Internet Architecture · Computer Science 2010-06-24 Jeherul Islam , P. K. Singh

Motif counting plays a crucial role in understanding the structural properties of networks. By computing motif frequencies, researchers can draw key insights into the structural properties of the underlying network. As networks become…

Social and Information Networks · Computer Science 2025-03-26 Haozhe Yin , Kai Wang , Wenjie Zhang , Yizhang He , Ying Zhang , Xuemin Lin

In this paper, we are interested in improving the performance of constructive network coding schemes in lossy wireless environments.We propose I2NC - a cross-layer approach that combines inter-session and intra-session network coding and…

Networking and Internet Architecture · Computer Science 2012-02-24 Hulya Seferoglu , Athina Markopoulou , K. K. Ramakrishnan

Social network analysis is an important problem in data mining. A fundamental step for analyzing social networks is to encode network data into low-dimensional representations, i.e., network embeddings, so that the network topology…

Social and Information Networks · Computer Science 2019-04-19 Qiaoyu Tan , Ninghao Liu , Xia Hu

Network tomography plays a crucial role in network monitoring and management, where network topology serves as the fundamental basis for various tomography tasks including traffic matrix estimation and link performance inference. The…

Cryptography and Security · Computer Science 2025-05-08 Chengze Du , Jibin Shi , Hui Xu , Guangzhen Yao

Predicting the occurrence of links is a fundamental problem in networks. In the link prediction problem we are given a snapshot of a network and would like to infer which interactions among existing members are likely to occur in the near…

Social and Information Networks · Computer Science 2010-11-19 L. Backstrom , J. Leskovec

This paper investigates the interplay between cooperation and achievable rates in multi-terminal networks. Cooperation refers to the process of nodes working together to relay data toward the destination. There is an inherent tradeoff…

Information Theory · Computer Science 2010-04-15 Lawrence Ong , Mehul Motani

Internet mapping projects generally consist in sampling the network from a limited set of sources by using traceroute probes. This methodology, akin to the merging of spanning trees from the different sources to a set of destinations, leads…

Networking and Internet Architecture · Computer Science 2011-11-09 Fabien Viger , Alain Barrat , Luca Dall'Asta , Cun-Hui Zhang , Eric D. Kolaczyk

Random Linear Network Coding (RLNC) is a transmission scheme that opts for linear combinations of the transmitted packets at a subset of the intermediate nodes. This scheme is usually considered when Network Coding (NC) is desired over…

Information Theory · Computer Science 2023-04-27 Amine Brahimi , Fatiha Merazka

We propose a novel approach for preserving topological structures of the input space in latent representations of autoencoders. Using persistent homology, a technique from topological data analysis, we calculate topological signatures of…

Machine Learning · Computer Science 2021-06-01 Michael Moor , Max Horn , Bastian Rieck , Karsten Borgwardt