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The enumeration of chemical graphs is an important topic in cheminformatics and bioinformatics, particularly in the discovery of novel drugs. These graphs are typically either tree-like multigraphs or composed of tree-like multigraphs…

Discrete Mathematics · Computer Science 2025-02-11 Muhammad Ilyas , Seemab Hayat , Naveed Ahmed Azam

Technology trends will cause data movement to account for the majority of energy expenditure and execution time on emerging computers. Therefore, computational complexity will no longer be a sufficient metric for comparing algorithms, and a…

Computational Complexity · Computer Science 2014-11-11 Venmugil Elango , Fabrice Rastello , Louis-Noel Pouchet , J. Ramanujam , P. Sadayappan

In the last decade, algorithmic frameworks based on a structural graph parameter called mim-width have been developed to solve generally NP-hard problems. However, it is known that the frameworks cannot be applied to the Clique problem, and…

Data Structures and Algorithms · Computer Science 2024-05-27 Yota Otachi , Akira Suzuki , Yuma Tamura

The visual complexity of a graph drawing is defined as the number of geometric objects needed to represent all its edges. In particular, one object may represent multiple edges, e.g., one needs only one line segment to draw two collinear…

Computational Geometry · Computer Science 2018-09-10 Philipp Kindermann , Wouter Meulemans , André Schulz

We study the problem of dynamically maintaining the connected components of an undirected graph subject to edge insertions and deletions. We give the first parallel algorithm for the problem which is work-efficient, supports batches of…

Data Structures and Algorithms · Computer Science 2024-11-19 Quinten De Man , Laxman Dhulipala , Adam Karczmarz , Jakub Łącki , Julian Shun , Zhongqi Wang

Many optimization problems can be naturally represented as (hyper) graphs, where vertices correspond to variables and edges to tasks, whose cost depends on the values of the adjacent variables. Capitalizing on the structure of the graph,…

Logic in Computer Science · Computer Science 2015-04-13 Nicklas Hoch , Ugo Montanari , Matteo Sammartino

In this paper, we revisit the split decomposition of graphs and give new combinatorial and algorithmic results for the class of totally decomposable graphs, also known as the distance hereditary graphs, and for two non-trivial subclasses,…

Discrete Mathematics · Computer Science 2011-04-19 Emeric Gioan , Christophe Paul

We study the time complexity of induced subgraph isomorphism problems where the pattern graph is fixed. The earliest known example of an improvement over trivial algorithms is by Itai and Rodeh (1978) who sped up triangle detection in…

Computational Complexity · Computer Science 2018-09-25 Markus Bläser , Balagopal Komarath , Karteek Sreenivasaiah

Visibility algorithms are a family of geometric and ordering criteria by which a real-valued time series of N data is mapped into a graph of N nodes. This graph has been shown to often inherit in its topology non-trivial properties of the…

Chaotic Dynamics · Physics 2018-07-04 Lucas Lacasa , Wolfram Just

Subgraph counting aims to count the occurrences of a subgraph template T in a given network G. The basic problem of computing structural properties such as counting triangles and other subgraphs has found applications in diverse domains.…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-03-12 Langshi Chen , Jiayu Li , Ariful Azad , Lei Jiang , Madhav Marathe , Anil Vullikanti , Andrey Nikolaev , Egor Smirnov , Ruslan Israfilov , Judy Qiu

We extend Babai's quasipolynomial-time graph isomorphism test (STOC 2016) and develop a quasipolynomial-time algorithm for the multiple-coset isomorphism problem. The algorithm for the multiple-coset isomorphism problem allows to exploit…

Data Structures and Algorithms · Computer Science 2020-04-21 Daniel Wiebking

This paper introduces a new methodology for constructing a network of companies called a dynamic asset graph. This is similar to the dynamic asset tree studied recently, as both are based on correlations between asset returns. However, the…

Statistical Mechanics · Physics 2009-11-10 J. -P. Onnela , A. Chakraborti , K. Kaski , J. Kertesz , A. Kanto

One exact and two heuristic algorithms for determining the generators, orbits and order of the graph automorphism group are presented. A basic tool of these algorithms is the well-known individualization and refinement procedure. A search…

Data Structures and Algorithms · Computer Science 2016-07-27 Stoicho D. Stoichev

In edge orientations, the goal is usually to orient (direct) the edges of an undirected $n$-vertex graph $G$ such that all out-degrees are bounded. When the graph $G$ is fully dynamic, i.e., admits edge insertions and deletions, we wish to…

Data Structures and Algorithms · Computer Science 2013-12-06 Tsvi Kopelowitz , Robert Krauthgamer , Ely Porat , Shay Solomon

Corneil, Olariu, and Stewart [SODA 1998; SIAM Journal on Discrete Mathematics 2009] presented a recognition algorithm for interval graphs by six graph searches. Li and Wu [Discrete Mathematics \& Theoretical Computer Science 2014]…

Data Structures and Algorithms · Computer Science 2020-10-08 Yixin Cao

Bir\'{o} et al. (1992) introduced $H$-graphs, intersection graphs of connected subgraphs of a subdivision of a graph $H$. They are related to many classes of geometric intersection graphs, e.g., interval graphs, circular-arc graphs, split…

Discrete Mathematics · Computer Science 2021-06-11 Steven Chaplick , Martin Töpfer , Jan Voborník , Peter Zeman

Graph reordering is a powerful technique to increase the locality of the representations of graphs, which can be helpful in several applications. We study how the technique can be used to improve compression of graphs and inverted indexes.…

Data Structures and Algorithms · Computer Science 2017-09-04 Laxman Dhulipala , Igor Kabiljo , Brian Karrer , Giuseppe Ottaviano , Sergey Pupyrev , Alon Shalita

An $H$-graph is one representable as the intersection graph of connected subgraphs of a suitable subdivision of a fixed graph $H$, introduced by Bir\'{o}, Hujter and Tuza (1992). An $H$-graph is proper if the representing subgraphs of $H$…

Data Structures and Algorithms · Computer Science 2022-03-24 Deniz Ağaoğlu Çağırıcı , Petr Hliněný

Intersection graphs are well-studied in the area of graph algorithms. Some intersection graph classes are known to have algorithms enumerating all unlabeled graphs by reverse search. Since these algorithms output graphs one by one and the…

Data Structures and Algorithms · Computer Science 2022-12-15 Jun Kawahara , Toshiki Saitoh , Hirokazu Takeda , Ryo Yoshinaka , Yui Yoshioka

A graph covering projection, also referred to as a locally bijective homomorphism, is a mapping between the vertices and edges of two graphs that preserves incidences and is a local bijection. This concept originates in topological graph…

Discrete Mathematics · Computer Science 2025-07-02 Jan Bok , Jiří Fiala , Nikola Jedličková , Jan Kratochvíl