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Hypothesis: The peculiar swelling behaviour of poly(N-isopropylacrylamide) (PNIPAM)-based responsive microgels provides the possibility to tune both softness and volume fraction with temperature, making these systems of great interest for…

Single domain proteins are thought to be tightly packed. The introduction of voids by mutations is often regarded as destabilizing. In this study we show that packing density for single domain proteins decreases with chain length. We find…

Soft Condensed Matter · Physics 2009-11-10 Jinfeng Zhang , Rong Chen , Chao Tang , Jie Liang

It is important to understand the origin of molecular line intensities and chemical composition in the molecular-cloud scale in the Galactic sources because it serves as a benchmark to compare with the chemical compositions of extragalactic…

Astrophysics of Galaxies · Physics 2019-02-13 Nanase Harada , Yuri Nishimura , Yoshimasa Watanabe , Satoshi Yamamoto , Yuri Aikawa , Nami Sakai , Takashi Shimonishi

Nanoscale molecular systems such as DNA require an atomistic quantum treatment to accurately capture their electrical properties, owing to their small dimensions. A central challenge in modeling transport through these systems is the…

Other Condensed Matter · Physics 2026-03-09 Hashem Mohammad , M. P. Anantram

Tightly packed granular particles under shear often exhibit intriguing intermittencies, specifically, sudden stress drops that we refer to as quaking. To probe the nature of this phenomenon, we prototype a circular shear cell that is…

Soft Condensed Matter · Physics 2025-02-18 Jr-Jun Lin , Cheng-En Tsai , Jung-Ren Huang , Jih-Chiang Tsai

We use ALMA and IRAM 30-m telescope data to investigate the relationship between the spectroscopically-traced dense gas fraction and the cloud-scale (120 pc) molecular gas surface density in five nearby, star-forming galaxies. We estimate…

We report on self-assemblies formed from spherical patchy particles interacting by a long-range attraction through a patch region in a two-dimensional system. We performed Monte Carlo simulations to find stable structures in a system with…

Soft Condensed Matter · Physics 2019-09-05 Masahide Sato

We study the internal structure of the Circum-Galactic Medium (CGM), using 29 spectra of 13 gravitationally lensed quasars with image separation angles of a few arcseconds, which correspond to 100 pc to 10 kpc in physical distances. After…

Astrophysics of Galaxies · Physics 2017-12-27 Suzuka Koyamada , Toru Misawa , Naohisa Inada , Masamune Oguri , Nobunari Kashikawa , Katsuya Okoshi

The conformation of polyelectrolytes in the solution state has long been of interest in polymer science. Herein we utilize all atom molecular dynamics simulations (MD) and small-angle x-ray scattering experiments (SAXS) to elucidate the…

Inside a cell, heterotypic proteins assemble in inhomogeneous, crowded systems where the abundance of these proteins vary with cell types. While some protein complexes form putative structures that can be visualized with imaging, there are…

Biomolecules · Quantitative Biology 2021-09-15 Andrei G. Gasic , Atrayee Sarkar , Margaret S. Cheung

Fundamental understanding of the effect of microscopic parameters on the dynamics of probe particles in different complex environments has wide implications. Examples include diffusion of proteins in the biological hydrogels, porous media,…

Soft Condensed Matter · Physics 2019-09-11 Praveen Kumar , Ligesh Theeyancheri , Subhasish Chaki , Rajarshi Chakrabarti

Biological tissue has a complex structure and exhibits rich spectroscopic behavior. There is \emph{no} tissue model up to now able to account for the observed spectroscopy of tissue light scattering and its anisotropy. Here we present,…

Biological Physics · Physics 2017-09-05 Min Xu

The central question in the field of 2D materials is how a material behaves when it is patterned at nanometer scale with different edge geometries. Due to the anisotropy inherent in the puckered structure, black phosphorene nanostructures…

Mesoscale and Nanoscale Physics · Physics 2019-12-13 Yi Ren , Pu Liu , Benliang Zhou , Xiaoying Zhou , Guanghui Zhou

Poly(ionic liquid)s (PILs), similar to their ionic liquid (IL) analogues, present a nanostructure arising from local interactions. The influence of this nanostructure on the macromolecular conformation of polymer chains is investigated for…

Small-angle neutron scattering (SANS) from cationic globular micellar solutions composed of sodium dodecyl sulfate (SDS) and in water was studied with contrast variation approach. Extensive computational studies have demonstrated that the…

Chemical Physics · Physics 2019-10-24 Katherine Chen , Chi-Huan Tung , Changwoo Do

The Stratum Corneum (SC), the outermost layer of skin, comprises rigid corneocytes (keratin filled dead cells) in a specialized lipid matrix. The continuous lipid matrix provides the main barrier against uncontrolled water loss and invasion…

Soft Condensed Matter · Physics 2016-09-28 Chinmay Das , Peter D. Olmsted

The structure of silica-latex nanocomposites of three matrix chain masses (20, 50, and 160 kg/mol of poly(ethyl methacrylate)) are studied using a SAXS/TEM approach, coupled via Monte Carlo simulations of scattering of fully polydisperse…

The density of a protein molecule is a key property within a variety of experimental techniques. We present a computational method for determining protein mass density that explicitly incorporates hydration effects. Our approach uses…

Protein aggregation in cell membrane is vital for the majority of biological functions. Recent experimental results suggest that transmembrane domains of proteins such as $\alpha$-helices and $\beta$-sheets have different structural…

Biological Physics · Physics 2016-01-20 Hamidreza Jafarinia , Atefeh Khoshnood , Mir Abbas Jalali

We present a review of neutrino phenomenology in the minimal seesaw model (MSM), an economical and intriguing extension of the Standard Model with only two heavy right-handed Majorana neutrinos. Given current neutrino oscillation data, the…

High Energy Physics - Phenomenology · Physics 2008-11-26 Wan-lei Guo , Zhi-zhong Xing , Shun Zhou