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Designing flexible graph kernels that can run well on various platforms is a crucial research problem due to the frequent usage of graphs for modeling data and recent architectural advances and variety. In this work, we propose a novel…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-09-13 Abdurrahman Yasar , Sivasankaran Rajamanickam , Jonathan W. Berry , Umit V. Catalyurek

Graph classification is an important area in both modern research and industry. Multiple applications, especially in chemistry and novel drug discovery, encourage rapid development of machine learning models in this area. To keep up with…

Machine Learning · Computer Science 2022-11-08 Jakub Adamczyk

Distributed processing of large-scale graph data has many practical applications and has been widely studied. In recent years, a lot of distributed graph processing frameworks and algorithms have been proposed. While many efforts have been…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-29 Lingkai Meng , Yu Shao , Long Yuan , Longbin Lai , Peng Cheng , Xue Li , Wenyuan Yu , Wenjie Zhang , Xuemin Lin , Jingren Zhou

Graph neural architecture search (GraphNAS) has recently aroused considerable attention in both academia and industry. However, two key challenges seriously hinder the further research of GraphNAS. First, since there is no consensus for the…

Machine Learning · Computer Science 2024-03-12 Yijian Qin , Ziwei Zhang , Xin Wang , Zeyang Zhang , Wenwu Zhu

The advent of Graph Neural Networks (GNNs) has revolutionized the field of machine learning, offering a novel paradigm for learning on graph-structured data. Unlike traditional neural networks, GNNs are capable of capturing complex…

Hardware Architecture · Computer Science 2024-06-26 Kaustubh Shivdikar

One of the major challenges in applications related to social networks, computational biology, collaboration networks etc., is to efficiently search for similar patterns in their underlying graphs. These graphs are typically noisy and…

Social and Information Networks · Computer Science 2015-12-17 Kanigalpula Samanvi , Naveen Sivadasan

I will present a way to implement graph algorithms which is different from traditional methods. This work was motivated by the belief that some ideas from software engineering should be applied to graph algorithms. Re-usability of software…

Data Structures and Algorithms · Computer Science 2010-03-24 Marco Nissen

In the recent years we have witnessed a rapid development of new algorithmic techniques for parameterized algorithms for graph separation problems. We present experimental evaluation of two cornerstone theoretical results in this area:…

Data Structures and Algorithms · Computer Science 2018-11-20 Marcin Pilipczuk , Michał Ziobro

This paper studies semi-supervised graph classification, which is an important problem with various applications in social network analysis and bioinformatics. This problem is typically solved by using graph neural networks (GNNs), which…

Machine Learning · Computer Science 2022-05-24 Wei Ju , Junwei Yang , Meng Qu , Weiping Song , Jianhao Shen , Ming Zhang

We introduce a random hypergraph model for core-periphery structure. By leveraging our model's sufficient statistics, we develop a novel statistical inference algorithm that is able to scale to large hypergraphs with runtime that is…

Social and Information Networks · Computer Science 2022-06-03 Marios Papachristou , Jon Kleinberg

Graph-based methods pervade the inference toolkits of numerous disciplines including sociology, biology, neuroscience, physics, chemistry, and engineering. A challenging problem encountered in this context pertains to determining the…

Machine Learning · Computer Science 2018-09-25 Daniel Romero , Vassilis N. Ioannidis , Georgios B. Giannakis

This paper wants to focus on providing a characterization of the runtime performances of state-of-the-art implementations of KGE alghoritms, in terms of memory footprint and execution time. Despite the rapidly growing interest in KGE…

Machine Learning · Computer Science 2020-11-10 Angelica Sofia Valeriani

Graph-structured data arise ubiquitously in many application domains. A fundamental problem is to quantify their similarities. Graph kernels are often used for this purpose, which decompose graphs into substructures and compare these…

Machine Learning · Computer Science 2020-03-26 Wei Ye , Zhen Wang , Rachel Redberg , Ambuj Singh

Graph-matching metrics such as Smatch are the de facto standard for evaluating neural semantic parsers, yet they capture surface overlap rather than logical equivalence. We reassess evaluation by pairing graph-matching with automated…

Computation and Language · Computer Science 2025-10-14 Hayate Funakura , Hyunsoo Kim , Koji Mineshima

Motivated by chemical applications, we revisit and extend a family of positive definite kernels for graphs based on the detection of common subtrees, initially proposed by Ramon et al. (2003). We propose new kernels with a parameter to…

Quantitative Methods · Quantitative Biology 2016-08-16 Pierre Mahé , Jean-Philippe Vert

Benchmark data sets are an indispensable ingredient of the evaluation of graph-based machine learning methods. We release a new data set, compiled from International Planning Competitions (IPC), for benchmarking graph classification,…

Machine Learning · Computer Science 2019-05-17 Patrick Ferber , Tengfei Ma , Siyu Huo , Jie Chen , Michael Katz

We introduce propagation kernels, a general graph-kernel framework for efficiently measuring the similarity of structured data. Propagation kernels are based on monitoring how information spreads through a set of given graphs. They leverage…

Machine Learning · Statistics 2014-10-14 Marion Neumann , Roman Garnett , Christian Bauckhage , Kristian Kersting

Temporal Graph Clustering (TGC) is a new task with little attention, focusing on node clustering in temporal graphs. Compared with existing static graph clustering, it can find the balance between time requirement and space requirement…

Machine Learning · Computer Science 2026-01-21 Meng Liu , Ke Liang , Siwei Wang , Xingchen Hu , Sihang Zhou , Xinwang Liu

Graphs are widely used in various fields of computer science. They have also found application in unrelated areas, leading to a diverse range of problems. These problems can be modeled as relationships between entities in various contexts,…

Data Structures and Algorithms · Computer Science 2024-05-20 Davide Rucci

We recently proposed a new ensemble clustering algorithm for graphs (ECG) based on the concept of consensus clustering. We validated our approach by replicating a study comparing graph clustering algorithms over benchmark graphs, showing…

Machine Learning · Computer Science 2021-02-17 Valérie Poulin , François Théberge