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One of the most important concepts in biological network analysis is that of network motifs, which are patterns of interconnections that occur in a given network at a frequency higher than expected in a random network. In this work we are…

Discrete Mathematics · Computer Science 2020-05-29 Diego P Rubert , Eloi Araujo , Marco A Stefanes , Jens Stoye , Fábio V Martinez

Large datasets with interactions between objects are common to numerous scientific fields (i.e. social science, internet, biology...). The interactions naturally define a graph and a common way to explore or summarize such dataset is graph…

Applications · Statistics 2009-10-13 Hugo Zanghi , Stevenn Volant , Christophe Ambroise

Assortativity measures the tendency of a vertex in a network being connected by other vertexes with respect to some vertex-specific features. Classical assortativity coefficients are defined for unweighted and undirected networks with…

Applications · Statistics 2021-01-15 Yelie Yuan , Jun Yan , Panpan Zhang

Model selection is treated as a standard performance boosting step in many machine learning applications. Once all other properties of a learning problem are fixed, the model is selected by grid search on a held-out validation set. This is…

Machine Learning · Statistics 2019-06-28 Manuel Haussmann , Fred A. Hamprecht , Melih Kandemir

The understanding of neural activity patterns is fundamentally linked to an understanding of how the brain's network architecture shapes dynamical processes. Established approaches rely mostly on deviations of a given network from certain…

Neurons and Cognition · Quantitative Biology 2014-09-19 Marc-Thorsten Huett , Marcus Kaiser , Claus C. Hilgetag

One of the paramount challenges in neuroscience is to understand the dynamics of individual neurons and how they give rise to network dynamics when interconnected. Historically, researchers have resorted to graph theory, statistics, and…

Neurons and Cognition · Quantitative Biology 2019-02-08 Jean-Baptiste Bardin , Gard Spreemann , Kathryn Hess

Learning graphs from sets of nodal observations represents a prominent problem formally known as graph topology inference. However, current approaches are limited by typically focusing on inferring single networks, and they assume that…

Social and Information Networks · Computer Science 2021-11-17 Samuel Rey , Andrei Buciulea , Madeline Navarro , Santiago Segarra , Antonio G. Marques

Properties of interest for crystals and molecules, such as band gap, elasticity, and solubility, are generally related to each other: they are governed by the same underlying laws of physics. However, when state-of-the-art graph neural…

Machine Learning · Computer Science 2022-08-04 Alexander New , Michael J. Pekala , Nam Q. Le , Janna Domenico , Christine D. Piatko , Christopher D. Stiles

Assortativity, i.e. the tendency of a vertex to bond with another based on their similarity, such as degree, is an important network characteristic that is well-known to be relevant for the network's robustness against attacks. Commonly it…

Physics and Society · Physics 2023-07-17 Marc Sabek , Uta Pigorsch

Understanding how neural networks learn remains one of the central challenges in machine learning research. From random at the start of training, the weights of a neural network evolve in such a way as to be able to perform a variety of…

Machine Learning · Computer Science 2020-10-28 Maxime Gabella

Natural and man-made transport webs are frequently dominated by dense sets of nested cycles. The architecture of these networks, as defined by the topology and edge weights, determines how efficiently the networks perform their function.…

Quantitative Methods · Quantitative Biology 2016-07-27 Carl D. Modes , Marcelo O. Magnasco , Eleni Katifori

Nowadays, there are many approaches designed for the task of detecting communities in social networks. Among them, some methods only consider the topological graph structure, while others take use of both the graph structure and the node…

Artificial Intelligence · Computer Science 2017-09-06 Salma Ben Dhaou , Kuang Zhou , Mouloud Kharoune , Arnaud Martin , Boutheina Ben Yaghlane

Many learning problems involve symmetries, and while invariance can be built into neural architectures, it can also emerge implicitly when training on group-structured data. We study this phenomenon in classical Hopfield networks and show…

Machine Learning · Computer Science 2026-01-21 Michael Murray , Tenzin Chan , Kedar Karhadker , Christopher J. Hillar

The relations, rather than the elements, constitute the structure of networks. We therefore develop a systematic approach to the analysis of networks, modelled as graphs or hypergraphs, that is based on structural properties of…

Discrete Mathematics · Computer Science 2020-12-08 Marzieh Eidi , Amirhossein Farzam , Wilmer Leal , Areejit Samal , Jürgen Jost

Models of complex networks often incorporate node-intrinsic properties abstracted as hidden variables. The probability of connections in the network is then a function of these variables. Real-world networks evolve over time, and many…

Physics and Society · Physics 2021-05-19 Harrison Hartle , Fragkiskos Papadopoulos , Dmitri Krioukov

In this paper, we consider the problem of exploring structural regularities of networks by dividing the nodes of a network into groups such that the members of each group have similar patterns of connections to other groups. Specifically,…

Physics and Society · Physics 2015-05-30 Hua-Wei Shen , Xue-Qi Cheng , Jia-Feng Guo

With the rapid development of online social media, online shopping sites and cyber-physical systems, heterogeneous information networks have become increasingly popular and content-rich over time. In many cases, such networks contain…

Databases · Computer Science 2012-02-01 Yizhou Sun , Charu C. Aggarwal , Jiawei Han

We introduce a new class of latent process models for dynamic relational network data with the goal of detecting time-dependent structure. Network data are often observed over time, and static network models for such data may fail to…

Methodology · Statistics 2013-11-15 Lucy F. Robinson , Carey E. Priebe

We propose a new algorithm to learn a one-hidden-layer convolutional neural network where both the convolutional weights and the outputs weights are parameters to be learned. Our algorithm works for a general class of (potentially…

Machine Learning · Computer Science 2018-06-05 Simon S. Du , Surbhi Goel

Deep neural networks come in many sizes and architectures. The choice of architecture, in conjunction with the dataset and learning algorithm, is commonly understood to affect the learned neural representations. Yet, recent results have…

Machine Learning · Computer Science 2024-07-08 Loek van Rossem , Andrew M. Saxe