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One of the major challenges in biology concerns the integration of data across length and time scales into a consistent framework: how do macroscopic properties and functionalities arise from the molecular regulatory networks - and how can…

Computational Engineering, Finance, and Science · Computer Science 2015-10-20 Dagmar Iber , Zahra Karimaddini , Erkan Ünal

Rod-like bacteria maintain their cylindrical shapes with remarkable precision during growth. However, they are also capable to adapt their shapes to external forces and constraints, for example by growing into narrow or curved confinements.…

Subcellular Processes · Quantitative Biology 2016-02-10 Ariel Amir , Sven van Teeffelen

Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…

Data Structures and Algorithms · Computer Science 2020-07-01 Gabriel Cardona , Joan Carles Pons , Celine Scornavacca

Plant classification and identification has so far been an important and difficult task. In this paper, an efficient and systematic approach for extracting the leaf architecture characters from captured digital images is proposed. The input…

Computer Vision and Pattern Recognition · Computer Science 2018-01-09 Mahmoud Sadeghi , Ali Zakerolhosseini , Ali Sonboli

Automatic detection and segmentation of overlapping leaves in dense foliage can be a difficult task, particularly for leaves with strong textures and high occlusions. We present Dense-Leaves, an image dataset with ground truth segmentation…

Computer Vision and Pattern Recognition · Computer Science 2018-04-06 Daniel D. Morris

Natural slender structures, such as plant leaves, petals, and tendrils, often exhibit complex three-dimensional (3D) morphologies-including twisting, helical coiling, and saddle-bending-driven by differential growth. The resulting internal…

Soft Condensed Matter · Physics 2025-06-24 Hao Liu , Mingwu Li , Dabiao Liu

The number of topologically different plane real algebraic curves of a given degree $d$ has the form $\exp(C d^2 + o(d^2))$. We determine the best available upper bound for the constant $C$. This bound follows from Arnold inequalities on…

Algebraic Geometry · Mathematics 2007-05-23 V. Kharlamov , S. Orevkov

Deep learning techniques involving image processing and data analysis are constantly evolving. Many domains adapt these techniques for object segmentation, instantiation and classification. Recently, agricultural industries adopted those…

Computer Vision and Pattern Recognition · Computer Science 2019-03-21 Dmitry Kuznichov , Alon Zvirin , Yaron Honen , Ron Kimmel

The plant microtubule cortical array is a striking feature of all growing plant cells. It consists of a more or less homogeneously distributed array of highly aligned microtubules connected to the inner side of the plasma membrane and…

Soft Condensed Matter · Physics 2013-05-29 Rhoda J. Hawkins , Simon H. Tindemans , Bela M. Mulder

Biofilm growth changes many physical properties of porous media such as porosity, permeability and mass transport parameters. The growth depends on various environmental conditions, and in particular, on flow rates. Modeling the evolution…

We propose a geometric growth model for weighted scale-free networks, which is controlled by two tunable parameters. We derive exactly the main characteristics of the networks, which are partially determined by the parameters. Analytical…

Physics and Society · Physics 2011-11-09 Zhongzhi Zhang , Shuigeng Zhou , Lichao Chen , Jihong Guan , Lujun Fang , Yichao Zhang

Large tree structures are ubiquitous and real-world relational datasets often have information associated with nodes (e.g., labels or other attributes) and edges (e.g., weights or distances) that need to be communicated to the viewers. Yet,…

Computational Geometry · Computer Science 2023-05-18 Kathryn Gray , Mingwei Li , Reyan Ahmed , Md. Khaledur Rahman , Ariful Azad , Stephen Kobourov , Katy Börner

We investigate the growth of needles from a flat substrate. We focus on the situation when needles suddenly begin to grow from the seeds randomly distributed on the line. The width of needles is ignored and we additionally assume that (i)…

Statistical Mechanics · Physics 2019-09-04 P. L. Krapivsky , L. I. Nazarov , M. V. Tamm

Sum-Product Networks with complex probability distribution at the leaves have been shown to be powerful tractable-inference probabilistic models. However, while learning the internal parameters has been amply studied, learning complex leaf…

Machine Learning · Computer Science 2017-06-15 Mattia Desana , Christoph Schnörr

Highly-optimized complex transport networks serve crucial functions in many man-made and natural systems such as power grids and plant or animal vasculature. Often, the relevant optimization functional is non-convex and characterized by…

Biological Physics · Physics 2016-09-23 Henrik Ronellenfitsch , Eleni Katifori

We propose a model for the growth of weighted networks that couples the establishment of new edges and vertices and the weights' dynamical evolution. The model is based on a simple weight-driven dynamics and generates networks exhibiting…

Disordered Systems and Neural Networks · Physics 2009-11-10 Alain Barrat , Marc Barthelemy , Alessandro Vespignani

We study a model of growing planar tree graphs where in each time step we separate the tree into two components by splitting a vertex and then connect the two pieces by inserting a new link between the daughter vertices. This model…

Statistical Mechanics · Physics 2009-11-13 Francois David , Mark Dukes , Thordur Jonsson , Sigurdur Orn Stefansson

Tissue growth can be modeled in two dimension by only using circular granular cells, which can grow and produce child. Linear spring-dashpot model is used to bind the cells with a cut-off interaction range of 1.1 times sum of radii of…

Biological Physics · Physics 2014-05-21 Sparisoma Viridi , Siti Nurul Khotimah , Devi Aprianti , Luman Haris , Freddy Haryanto

Space-saving design is a requirement that is encountered in biological systems and the development of modern technological devices alike. Many living organisms dynamically pack their polymer chains, filaments or membranes inside of…

Soft Condensed Matter · Physics 2014-07-18 Roman Vetter , Falk K. Wittel , Hans J. Herrmann

This study, our main topic is to devlop a new deep-learning approachs for plant leaf disease identification and detection using leaf image datasets. We also discussed the challenges facing current methods of leaf disease detection and how…

Machine Learning · Computer Science 2025-01-03 El Houcine El Fatimi